Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC093214.1-201ENST00000511688 1107 ntBASIC14.99□□□□□ -0.01
LDB3O75112 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.99□□□□□ -0.01
LDB3O75112 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
LDB3O75112 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.99□□□□□ -0.01
LDB3O75112 AL450472.2-201ENST00000603663 1156 ntBASIC14.99□□□□□ -0.01
LDB3O75112 AL590560.3-201ENST00000623350 461 ntBASIC14.99□□□□□ -0.01
LDB3O75112 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.99□□□□□ -0.01
LDB3O75112 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.98□□□□□ -0.01
LDB3O75112 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LDB3O75112 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.98□□□□□ -0.01
LDB3O75112 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.98□□□□□ -0.01
LDB3O75112 PHKG1P2-201ENST00000457537 863 ntBASIC14.98□□□□□ -0.01
LDB3O75112 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.98□□□□□ -0.01
LDB3O75112 AL512361.1-201ENST00000554200 418 ntBASIC14.98□□□□□ -0.01
LDB3O75112 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.98□□□□□ -0.01
LDB3O75112 AL033527.5-202ENST00000641632 1098 ntBASIC14.98□□□□□ -0.01
LDB3O75112 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDB3O75112 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.98□□□□□ -0.01
LDB3O75112 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.97□□□□□ -0.01
LDB3O75112 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
LDB3O75112 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LDB3O75112 CICP6-201ENST00000457191 2729 ntBASIC14.97□□□□□ -0.01
LDB3O75112 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
LDB3O75112 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.97□□□□□ -0.01
LDB3O75112 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
LDB3O75112 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LDB3O75112 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LDB3O75112 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LDB3O75112 FO393414.2-201ENST00000405153 598 ntBASIC14.97□□□□□ -0.01
LDB3O75112 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms