Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 WASH3P-207ENST00000560956 1394 ntBASIC13.76□□□□□ -0.21
CMTM3Q96MX0 FO538757.1-201ENST00000623083 1397 ntBASIC13.76□□□□□ -0.21
CMTM3Q96MX0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 AL365209.1-201ENST00000624418 6473 ntBASIC13.76□□□□□ -0.21
CMTM3Q96MX0 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CMTM3Q96MX0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 GPX1P2-201ENST00000429271 606 ntBASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 FICD-205ENST00000552758 603 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AL049597.2-201ENST00000565575 961 ntBASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AC006557.2-201ENST00000592985 1240 ntBASIC13.75□□□□□ -0.21
CMTM3Q96MX0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AC140479.7-201ENST00000636301 2332 ntBASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MIR600HG-201ENST00000449175 5984 ntBASIC13.75□□□□□ -0.21
CMTM3Q96MX0 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 AC006504.4-201ENST00000592118 1568 ntBASIC13.75□□□□□ -0.21
CMTM3Q96MX0 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CMTM3Q96MX0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.74□□□□□ -0.21
CMTM3Q96MX0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms