Protein–RNA interactions for Protein: Q2M243

CCDC27, Coiled-coil domain-containing protein 27, humanhuman

Predictions only

Length 656 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC27Q2M243 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC27Q2M243 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC27Q2M243 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC27Q2M243 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC27Q2M243 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC27Q2M243 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC27Q2M243 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 SPDYE18-201ENST00000510091 1050 ntBASIC20.63■□□□□ 0.89
CCDC27Q2M243 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 AC004790.1-201ENST00000612686 536 ntBASIC20.63■□□□□ 0.89
CCDC27Q2M243 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC27Q2M243 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC27Q2M243 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 UGT1A2P-201ENST00000454886 866 ntBASIC20.62■□□□□ 0.89
CCDC27Q2M243 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 SRD5A3P1-201ENST00000603021 949 ntBASIC20.62■□□□□ 0.89
CCDC27Q2M243 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 PRAL-201ENST00000624952 3286 ntBASIC20.62■□□□□ 0.89
CCDC27Q2M243 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC27Q2M243 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC27Q2M243 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 AJ011932.1-201ENST00000621707 465 ntBASIC20.61■□□□□ 0.89
CCDC27Q2M243 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 AC138969.3-201ENST00000546612 1459 ntBASIC20.61■□□□□ 0.89
CCDC27Q2M243 AC138932.2-201ENST00000548268 1459 ntBASIC20.61■□□□□ 0.89
CCDC27Q2M243 AC126755.4-201ENST00000549796 1459 ntBASIC20.61■□□□□ 0.89
CCDC27Q2M243 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC27Q2M243 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC27Q2M243 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC27Q2M243 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC27Q2M243 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC27Q2M243 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC27Q2M243 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC27Q2M243 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC27Q2M243 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC27Q2M243 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC27Q2M243 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC27Q2M243 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC27Q2M243 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC27Q2M243 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms