Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 AP000842.3-202ENST00000569238 1080 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 SPDYE9P-201ENST00000570642 692 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 AC026120.1-201ENST00000611536 926 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 SPDYE10P-202ENST00000612005 668 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 SPDYE8P-202ENST00000612377 668 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 AC105250.1-201ENST00000509378 2057 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 AL136982.4-201ENST00000437689 1740 ntBASIC15.4■□□□□ 0.06
HMGCS1Q01581 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGCS1Q01581 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HMGCS1Q01581 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 AC090616.6-203ENST00000579186 1945 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 MCCD1P2-201ENST00000423228 335 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 AC004832.2-201ENST00000426397 482 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 TIMM8BP1-201ENST00000452384 211 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 LINC01225-203ENST00000563550 1244 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 AC068418.2-201ENST00000577309 3703 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 TMBIM7P-203ENST00000641617 1718 ntBASIC15.39■□□□□ 0.05
HMGCS1Q01581 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGCS1Q01581 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.39■□□□□ 0.05
HMGCS1Q01581 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 REXO1L1P-202ENST00000608646 1974 ntBASIC15.38■□□□□ 0.05
HMGCS1Q01581 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 MIR346-201ENST00000362234 95 ntBASIC15.38■□□□□ 0.05
HMGCS1Q01581 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HMGCS1Q01581 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.38■□□□□ 0.05
HMGCS1Q01581 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms