Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18■□□□□ 0.47
CCNA1P78396 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCNA1P78396 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCNA1P78396 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18■□□□□ 0.47
CCNA1P78396 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCNA1P78396 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCNA1P78396 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCNA1P78396 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCNA1P78396 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 DRD5P1-201ENST00000456605 1438 ntBASIC17.99■□□□□ 0.47
CCNA1P78396 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCNA1P78396 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNA1P78396 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNA1P78396 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 AC099548.2-209ENST00000480264 625 ntBASIC17.99■□□□□ 0.47
CCNA1P78396 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.99■□□□□ 0.47
CCNA1P78396 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNA1P78396 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.99■□□□□ 0.47
CCNA1P78396 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.99■□□□□ 0.47
CCNA1P78396 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCNA1P78396 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCNA1P78396 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
CCNA1P78396 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 AL133267.1-201ENST00000398220 340 ntBASIC17.98■□□□□ 0.47
CCNA1P78396 RPL13AP20-201ENST00000459725 609 ntBASIC17.98■□□□□ 0.47
CCNA1P78396 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.98■□□□□ 0.47
CCNA1P78396 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
CCNA1P78396 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.98■□□□□ 0.47
CCNA1P78396 AC243960.2-201ENST00000600996 747 ntBASIC17.98■□□□□ 0.47
CCNA1P78396 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.98■□□□□ 0.47
CCNA1P78396 AC009542.2-202ENST00000619004 1067 ntBASIC17.98■□□□□ 0.47
CCNA1P78396 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCNA1P78396 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCNA1P78396 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.98■□□□□ 0.47
CCNA1P78396 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.98■□□□□ 0.47
CCNA1P78396 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.98■□□□□ 0.47
CCNA1P78396 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCNA1P78396 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCNA1P78396 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCNA1P78396 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CCNA1P78396 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCNA1P78396 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.97■□□□□ 0.47
CCNA1P78396 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms