Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CDH6P55285 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.61■□□□□ 0.25
CDH6P55285 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH6P55285 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CDH6P55285 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH6P55285 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CDH6P55285 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 AC092384.3-202ENST00000564646 2873 ntBASIC16.6■□□□□ 0.25
CDH6P55285 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH6P55285 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 AL353705.2-201ENST00000428243 662 ntBASIC16.6■□□□□ 0.25
CDH6P55285 GPS2P2-201ENST00000430745 888 ntBASIC16.6■□□□□ 0.25
CDH6P55285 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH6P55285 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH6P55285 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.6■□□□□ 0.25
CDH6P55285 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.6■□□□□ 0.25
CDH6P55285 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CDH6P55285 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH6P55285 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.6■□□□□ 0.25
CDH6P55285 AC018529.1-201ENST00000613063 361 ntBASIC16.6■□□□□ 0.25
CDH6P55285 AC079781.4-201ENST00000641908 219 ntBASIC16.6■□□□□ 0.25
CDH6P55285 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CDH6P55285 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH6P55285 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CDH6P55285 KRT8P37-201ENST00000451609 1420 ntBASIC16.6■□□□□ 0.25
CDH6P55285 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CDH6P55285 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CDH6P55285 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH6P55285 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CDH6P55285 AC092127.1-201ENST00000567093 3455 ntBASIC16.6■□□□□ 0.25
CDH6P55285 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH6P55285 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 AC063926.3-201ENST00000624734 5658 ntBASIC16.59■□□□□ 0.25
CDH6P55285 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CDH6P55285 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 CNN2P11-201ENST00000429351 262 ntBASIC16.59■□□□□ 0.25
CDH6P55285 SPDYE14P-201ENST00000442619 822 ntBASIC16.59■□□□□ 0.25
CDH6P55285 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 AC023141.5-201ENST00000458585 616 ntBASIC16.59■□□□□ 0.25
CDH6P55285 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.59■□□□□ 0.25
CDH6P55285 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.59■□□□□ 0.25
CDH6P55285 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 SNHG9-202ENST00000564014 471 ntBASIC16.59■□□□□ 0.25
CDH6P55285 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 AC009093.7-201ENST00000623853 1223 ntBASIC16.59■□□□□ 0.25
CDH6P55285 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.59■□□□□ 0.25
CDH6P55285 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
CDH6P55285 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDH6P55285 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms