Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGCS2P54868 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGCS2P54868 AC107373.2-201ENST00000607735 490 ntBASIC18.25■□□□□ 0.51
HMGCS2P54868 AC244093.1-201ENST00000610837 814 ntBASIC18.25■□□□□ 0.51
HMGCS2P54868 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGCS2P54868 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS2P54868 RHOXF1P1-202ENST00000635473 501 ntBASIC18.25■□□□□ 0.51
HMGCS2P54868 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS2P54868 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.25■□□□□ 0.51
HMGCS2P54868 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS2P54868 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HMGCS2P54868 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGCS2P54868 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS2P54868 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGCS2P54868 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS2P54868 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HMGCS2P54868 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGCS2P54868 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGCS2P54868 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGCS2P54868 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HMGCS2P54868 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
HMGCS2P54868 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
HMGCS2P54868 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGCS2P54868 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 AGGF1P2-201ENST00000426656 2106 ntBASIC18.24■□□□□ 0.51
HMGCS2P54868 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 RPL13AP20-201ENST00000459725 609 ntBASIC18.24■□□□□ 0.51
HMGCS2P54868 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 AC079316.1-201ENST00000548397 411 ntBASIC18.24■□□□□ 0.51
HMGCS2P54868 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGCS2P54868 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGCS2P54868 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGCS2P54868 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HMGCS2P54868 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGCS2P54868 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HMGCS2P54868 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGCS2P54868 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGCS2P54868 AP001582.1-201ENST00000525856 295 ntBASIC18.23■□□□□ 0.51
HMGCS2P54868 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGCS2P54868 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
HMGCS2P54868 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HMGCS2P54868 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGCS2P54868 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGCS2P54868 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGCS2P54868 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS2P54868 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
HMGCS2P54868 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms