Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 AP006288.1-201ENST00000446065 395 ntBASIC15.53■□□□□ 0.08
HNF4AP41235 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.53■□□□□ 0.08
HNF4AP41235 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
HNF4AP41235 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.53■□□□□ 0.08
HNF4AP41235 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.53■□□□□ 0.08
HNF4AP41235 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.53■□□□□ 0.08
HNF4AP41235 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.53■□□□□ 0.08
HNF4AP41235 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 AC079781.4-201ENST00000641908 219 ntBASIC15.53■□□□□ 0.08
HNF4AP41235 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
HNF4AP41235 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
HNF4AP41235 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.53■□□□□ 0.08
HNF4AP41235 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.53■□□□□ 0.08
HNF4AP41235 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HNF4AP41235 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
HNF4AP41235 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
HNF4AP41235 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.52■□□□□ 0.08
HNF4AP41235 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HNF4AP41235 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.52■□□□□ 0.08
HNF4AP41235 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.52■□□□□ 0.08
HNF4AP41235 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.52■□□□□ 0.08
HNF4AP41235 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.52■□□□□ 0.08
HNF4AP41235 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.52■□□□□ 0.08
HNF4AP41235 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.52■□□□□ 0.08
HNF4AP41235 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
HNF4AP41235 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.52■□□□□ 0.08
HNF4AP41235 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HNF4AP41235 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
HNF4AP41235 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.52■□□□□ 0.07
HNF4AP41235 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.52■□□□□ 0.07
HNF4AP41235 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.52■□□□□ 0.07
HNF4AP41235 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
HNF4AP41235 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
HNF4AP41235 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.51■□□□□ 0.07
HNF4AP41235 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HNF4AP41235 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 AC134407.2-201ENST00000625089 1978 ntBASIC15.51■□□□□ 0.07
HNF4AP41235 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HNF4AP41235 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 AP3S2-216ENST00000617003 1561 ntBASIC15.51■□□□□ 0.07
HNF4AP41235 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.51■□□□□ 0.07
HNF4AP41235 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HNF4AP41235 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.51■□□□□ 0.07
HNF4AP41235 AC023141.5-201ENST00000458585 616 ntBASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms