Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MMP28Q9H239 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC14.21□□□□□ -0.14
MMP28Q9H239 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MMP28Q9H239 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
MMP28Q9H239 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC013726.1-201ENST00000563747 2285 ntBASIC14.2□□□□□ -0.14
MMP28Q9H239 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC005252.3-201ENST00000623855 2258 ntBASIC14.2□□□□□ -0.14
MMP28Q9H239 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC097376.2-205ENST00000610159 5334 ntBASIC14.2□□□□□ -0.14
MMP28Q9H239 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 AL020989.1-201ENST00000422979 469 ntBASIC14.2□□□□□ -0.14
MMP28Q9H239 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AL160237.2-201ENST00000556165 472 ntBASIC14.2□□□□□ -0.14
MMP28Q9H239 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.2□□□□□ -0.14
MMP28Q9H239 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.2□□□□□ -0.14
MMP28Q9H239 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 OR2I1P-209ENST00000641730 5365 ntBASIC14.2□□□□□ -0.14
MMP28Q9H239 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MMP28Q9H239 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.2□□□□□ -0.14
MMP28Q9H239 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MMP28Q9H239 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
MMP28Q9H239 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
MMP28Q9H239 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.19□□□□□ -0.14
MMP28Q9H239 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.19□□□□□ -0.14
MMP28Q9H239 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 AP005117.1-201ENST00000584346 1413 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.19□□□□□ -0.14
MMP28Q9H239 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 RBM17P3-201ENST00000417687 1192 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.19□□□□□ -0.14
MMP28Q9H239 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 AC104692.2-201ENST00000603054 253 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 AP001269.4-201ENST00000609611 512 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 CICP20-201ENST00000443330 2801 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.19□□□□□ -0.14
MMP28Q9H239 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.19□□□□□ -0.14
MMP28Q9H239 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 AL021920.2-201ENST00000624828 1351 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MMP28Q9H239 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
MMP28Q9H239 AC092919.2-201ENST00000623631 1645 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 AC006277.1-201ENST00000624348 1610 ntBASIC14.19□□□□□ -0.14
MMP28Q9H239 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms