Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 LINC01144-201ENST00000626198 1710 ntBASIC16.79■□□□□ 0.28
RNF43Q68DV7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 NME2P1-201ENST00000426182 414 ntBASIC16.79■□□□□ 0.28
RNF43Q68DV7 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 PCGF3-213ENST00000620529 1899 ntBASIC16.79■□□□□ 0.28
RNF43Q68DV7 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
RNF43Q68DV7 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF43Q68DV7 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 PIN1P1-201ENST00000412108 996 ntBASIC16.78■□□□□ 0.28
RNF43Q68DV7 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 RN7SL692P-201ENST00000464677 288 ntBASIC16.78■□□□□ 0.28
RNF43Q68DV7 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 AC097493.3-201ENST00000509725 367 ntBASIC16.78■□□□□ 0.28
RNF43Q68DV7 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 AL596325.1-201ENST00000563991 1082 ntBASIC16.78■□□□□ 0.28
RNF43Q68DV7 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 AL662799.1-202ENST00000614205 422 ntBASIC16.78■□□□□ 0.28
RNF43Q68DV7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF43Q68DV7 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF43Q68DV7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 AL035456.1-201ENST00000456064 1369 ntBASIC16.77■□□□□ 0.28
RNF43Q68DV7 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.77■□□□□ 0.28
RNF43Q68DV7 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF43Q68DV7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
RNF43Q68DV7 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms