Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.28□□□□□ -0.12
H3F3AP84243 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.28□□□□□ -0.12
H3F3AP84243 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.28□□□□□ -0.12
H3F3AP84243 PHKG1P2-201ENST00000457537 863 ntBASIC14.28□□□□□ -0.12
H3F3AP84243 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
H3F3AP84243 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.28□□□□□ -0.12
H3F3AP84243 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 DUX4L27-201ENST00000554796 1261 ntBASIC14.28□□□□□ -0.12
H3F3AP84243 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
H3F3AP84243 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.28□□□□□ -0.12
H3F3AP84243 TEX28P1-201ENST00000613479 1221 ntBASIC14.28□□□□□ -0.12
H3F3AP84243 TEX28P2-201ENST00000617764 1221 ntBASIC14.28□□□□□ -0.12
H3F3AP84243 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
H3F3AP84243 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
H3F3AP84243 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
H3F3AP84243 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.27□□□□□ -0.12
H3F3AP84243 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
H3F3AP84243 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
H3F3AP84243 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
H3F3AP84243 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
H3F3AP84243 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
H3F3AP84243 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
H3F3AP84243 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.27□□□□□ -0.13
H3F3AP84243 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 MIR943-201ENST00000401286 94 ntBASIC14.27□□□□□ -0.13
H3F3AP84243 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.27□□□□□ -0.13
H3F3AP84243 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.27□□□□□ -0.13
H3F3AP84243 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.27□□□□□ -0.13
H3F3AP84243 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.27□□□□□ -0.13
H3F3AP84243 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.27□□□□□ -0.13
H3F3AP84243 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 AL450472.2-201ENST00000603663 1156 ntBASIC14.27□□□□□ -0.13
H3F3AP84243 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
H3F3AP84243 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
H3F3AP84243 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.27□□□□□ -0.13
H3F3AP84243 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.27□□□□□ -0.13
H3F3AP84243 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.27□□□□□ -0.13
H3F3AP84243 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
H3F3AP84243 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
H3F3AP84243 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
H3F3AP84243 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.26□□□□□ -0.13
H3F3AP84243 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
H3F3AP84243 AC018892.3-201ENST00000623986 2499 ntBASIC14.26□□□□□ -0.13
H3F3AP84243 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
H3F3AP84243 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
H3F3AP84243 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
H3F3AP84243 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.26□□□□□ -0.13
H3F3AP84243 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
H3F3AP84243 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
H3F3AP84243 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms