Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CDH11P55287 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
CDH11P55287 AC129492.6-201ENST00000611383 1305 ntBASIC14.71□□□□□ -0.05
CDH11P55287 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CDH11P55287 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.71□□□□□ -0.05
CDH11P55287 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.71□□□□□ -0.05
CDH11P55287 ELL2P1-201ENST00000413990 1906 ntBASIC14.71□□□□□ -0.05
CDH11P55287 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.71□□□□□ -0.05
CDH11P55287 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CDH11P55287 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 AL513480.1-201ENST00000451731 511 ntBASIC14.71□□□□□ -0.05
CDH11P55287 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.71□□□□□ -0.05
CDH11P55287 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.71□□□□□ -0.05
CDH11P55287 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.71□□□□□ -0.05
CDH11P55287 AC068137.2-201ENST00000605408 478 ntBASIC14.71□□□□□ -0.05
CDH11P55287 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.71□□□□□ -0.05
CDH11P55287 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDH11P55287 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CDH11P55287 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CDH11P55287 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CDH11P55287 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.71□□□□□ -0.06
CDH11P55287 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CDH11P55287 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
CDH11P55287 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CDH11P55287 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 PCDHA3-202ENST00000532566 4594 ntBASIC14.7□□□□□ -0.06
CDH11P55287 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.7□□□□□ -0.06
CDH11P55287 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 AC136621.1-201ENST00000624017 2304 ntBASIC14.7□□□□□ -0.06
CDH11P55287 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
CDH11P55287 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.7□□□□□ -0.06
CDH11P55287 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 FAM185BP-201ENST00000443595 716 ntBASIC14.7□□□□□ -0.06
CDH11P55287 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.7□□□□□ -0.06
CDH11P55287 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CDH11P55287 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.7□□□□□ -0.06
CDH11P55287 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.7□□□□□ -0.06
CDH11P55287 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.7□□□□□ -0.06
CDH11P55287 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDH11P55287 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
CDH11P55287 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
CDH11P55287 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.69□□□□□ -0.06
CDH11P55287 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
CDH11P55287 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.69□□□□□ -0.06
CDH11P55287 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
CDH11P55287 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDH11P55287 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CDH11P55287 PMS2P2-201ENST00000425039 1128 ntBASIC14.69□□□□□ -0.06
CDH11P55287 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.69□□□□□ -0.06
CDH11P55287 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.69□□□□□ -0.06
CDH11P55287 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.69□□□□□ -0.06
CDH11P55287 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms