Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SOX3P41225 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SOX3P41225 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.1■□□□□ 0.01
SOX3P41225 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SOX3P41225 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX3P41225 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SOX3P41225 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.09■□□□□ 0.01
SOX3P41225 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 HMGN1P19-201ENST00000436976 333 ntBASIC15.09■□□□□ 0.01
SOX3P41225 AC125807.1-201ENST00000483097 614 ntBASIC15.09■□□□□ 0.01
SOX3P41225 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.09■□□□□ 0.01
SOX3P41225 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.09■□□□□ 0.01
SOX3P41225 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
SOX3P41225 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.09■□□□□ 0.01
SOX3P41225 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
SOX3P41225 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX3P41225 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX3P41225 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
SOX3P41225 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.08■□□□□ 0.01
SOX3P41225 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0.01
SOX3P41225 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.08■□□□□ 0.01
SOX3P41225 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.08■□□□□ 0.01
SOX3P41225 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.08■□□□□ 0.01
SOX3P41225 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
SOX3P41225 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
SOX3P41225 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.08■□□□□ 0
SOX3P41225 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.08■□□□□ 0
SOX3P41225 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
SOX3P41225 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.08■□□□□ 0
SOX3P41225 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.08■□□□□ 0
SOX3P41225 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 KLF2P3-201ENST00000451977 1087 ntBASIC15.08■□□□□ 0
SOX3P41225 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
SOX3P41225 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.08■□□□□ 0
SOX3P41225 RNA5SP410-201ENST00000516285 106 ntBASIC15.08■□□□□ 0
SOX3P41225 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.08■□□□□ 0
SOX3P41225 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.08■□□□□ 0
SOX3P41225 DUX4L27-201ENST00000554796 1261 ntBASIC15.08■□□□□ 0
SOX3P41225 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.08■□□□□ 0
SOX3P41225 AC051619.7-201ENST00000568314 623 ntBASIC15.08■□□□□ 0
SOX3P41225 MIR4453-201ENST00000584019 89 ntBASIC15.08■□□□□ 0
SOX3P41225 AC018529.1-201ENST00000613063 361 ntBASIC15.08■□□□□ 0
SOX3P41225 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.08■□□□□ 0
SOX3P41225 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
SOX3P41225 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
SOX3P41225 LINC01144-201ENST00000626198 1710 ntBASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms