Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
HOXC9P31274 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC9P31274 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC9P31274 AL133338.1-201ENST00000565695 1517 ntBASIC20.88■□□□□ 0.93
HOXC9P31274 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC9P31274 RPL13AP20-201ENST00000459725 609 ntBASIC20.88■□□□□ 0.93
HOXC9P31274 CD74-212ENST00000524315 584 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC9P31274 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC9P31274 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HOXC9P31274 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC9P31274 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.88■□□□□ 0.93
HOXC9P31274 AC010328.2-201ENST00000597698 1111 ntBASIC20.88■□□□□ 0.93
HOXC9P31274 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXC9P31274 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HOXC9P31274 AL596087.1-201ENST00000400979 1969 ntBASIC20.88■□□□□ 0.93
HOXC9P31274 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC9P31274 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXC9P31274 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXC9P31274 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HOXC9P31274 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC20.87■□□□□ 0.93
HOXC9P31274 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXC9P31274 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXC9P31274 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.87■□□□□ 0.93
HOXC9P31274 C2orf27AP3-201ENST00000434123 579 ntBASIC20.87■□□□□ 0.93
HOXC9P31274 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HOXC9P31274 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HOXC9P31274 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 AL354718.3-201ENST00000616414 581 ntBASIC20.87■□□□□ 0.93
HOXC9P31274 CR382287.1-201ENST00000623954 586 ntBASIC20.87■□□□□ 0.93
HOXC9P31274 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXC9P31274 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXC9P31274 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
HOXC9P31274 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
HOXC9P31274 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXC9P31274 PCDHA12-202ENST00000613593 2588 ntBASIC20.87■□□□□ 0.93
HOXC9P31274 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
HOXC9P31274 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXC9P31274 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 ZNF767P-206ENST00000513792 565 ntBASIC20.86■□□□□ 0.93
HOXC9P31274 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 AP005019.2-201ENST00000615104 511 ntBASIC20.86■□□□□ 0.93
HOXC9P31274 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
HOXC9P31274 AL138799.1-201ENST00000448213 1675 ntBASIC20.86■□□□□ 0.93
HOXC9P31274 AL138709.1-201ENST00000614840 1693 ntBASIC20.86■□□□□ 0.93
HOXC9P31274 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXC9P31274 NKILA-202ENST00000614771 2598 ntBASIC20.86■□□□□ 0.93
HOXC9P31274 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXC9P31274 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.85■□□□□ 0.93
HOXC9P31274 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.85■□□□□ 0.93
HOXC9P31274 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXC9P31274 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
HOXC9P31274 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXC9P31274 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.85■□□□□ 0.93
HOXC9P31274 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
HOXC9P31274 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms