Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
MSH3P20585 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.94■□□□□ 0.14
MSH3P20585 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.94■□□□□ 0.14
MSH3P20585 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.94■□□□□ 0.14
MSH3P20585 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
MSH3P20585 AC106028.4-201ENST00000614509 607 ntBASIC15.94■□□□□ 0.14
MSH3P20585 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.94■□□□□ 0.14
MSH3P20585 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.94■□□□□ 0.14
MSH3P20585 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
MSH3P20585 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.94■□□□□ 0.14
MSH3P20585 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.94■□□□□ 0.14
MSH3P20585 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 AL691432.1-201ENST00000596308 1422 ntBASIC15.94■□□□□ 0.14
MSH3P20585 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
MSH3P20585 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
MSH3P20585 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.93■□□□□ 0.14
MSH3P20585 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.93■□□□□ 0.14
MSH3P20585 AC107890.1-201ENST00000422478 521 ntBASIC15.93■□□□□ 0.14
MSH3P20585 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.93■□□□□ 0.14
MSH3P20585 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.93■□□□□ 0.14
MSH3P20585 BANF1P1-201ENST00000553684 263 ntBASIC15.93■□□□□ 0.14
MSH3P20585 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.93■□□□□ 0.14
MSH3P20585 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.93■□□□□ 0.14
MSH3P20585 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.93■□□□□ 0.14
MSH3P20585 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
MSH3P20585 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.93■□□□□ 0.14
MSH3P20585 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
MSH3P20585 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.92■□□□□ 0.14
MSH3P20585 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 AL136982.4-201ENST00000437689 1740 ntBASIC15.92■□□□□ 0.14
MSH3P20585 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 AC004987.2-201ENST00000395959 1148 ntBASIC15.92■□□□□ 0.14
MSH3P20585 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.92■□□□□ 0.14
MSH3P20585 AC069120.2-201ENST00000524091 540 ntBASIC15.92■□□□□ 0.14
MSH3P20585 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.92■□□□□ 0.14
MSH3P20585 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.92■□□□□ 0.14
MSH3P20585 AC051619.7-201ENST00000568314 623 ntBASIC15.92■□□□□ 0.14
MSH3P20585 AL589739.1-201ENST00000607720 493 ntBASIC15.92■□□□□ 0.14
MSH3P20585 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.92■□□□□ 0.14
MSH3P20585 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
MSH3P20585 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms