Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SPTA1P02549 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.42□□□□□ -0.1
SPTA1P02549 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
SPTA1P02549 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SPTA1P02549 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 REXO1L8P-201ENST00000604378 1897 ntBASIC14.41□□□□□ -0.1
SPTA1P02549 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 MIR1227-201ENST00000408484 88 ntBASIC14.41□□□□□ -0.1
SPTA1P02549 AC245100.5-201ENST00000452108 331 ntBASIC14.41□□□□□ -0.1
SPTA1P02549 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 RN7SL720P-201ENST00000488178 304 ntBASIC14.41□□□□□ -0.1
SPTA1P02549 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.41□□□□□ -0.1
SPTA1P02549 CLUHP6-201ENST00000580789 941 ntBASIC14.41□□□□□ -0.1
SPTA1P02549 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.41□□□□□ -0.1
SPTA1P02549 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.41□□□□□ -0.1
SPTA1P02549 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.41□□□□□ -0.1
SPTA1P02549 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC14.41□□□□□ -0.1
SPTA1P02549 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.41□□□□□ -0.1
SPTA1P02549 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.41□□□□□ -0.1
SPTA1P02549 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
SPTA1P02549 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SPTA1P02549 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.41□□□□□ -0.1
SPTA1P02549 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.41□□□□□ -0.1
SPTA1P02549 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SPTA1P02549 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SPTA1P02549 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 AC139713.2-201ENST00000641328 2723 ntBASIC14.4□□□□□ -0.1
SPTA1P02549 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SPTA1P02549 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.4□□□□□ -0.1
SPTA1P02549 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
SPTA1P02549 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 NEFHP1-201ENST00000412845 2629 ntBASIC14.4□□□□□ -0.1
SPTA1P02549 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SPTA1P02549 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.4□□□□□ -0.1
SPTA1P02549 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SPTA1P02549 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.4□□□□□ -0.1
SPTA1P02549 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SPTA1P02549 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 AC106760.1-201ENST00000508690 800 ntBASIC14.4□□□□□ -0.1
SPTA1P02549 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.4□□□□□ -0.1
SPTA1P02549 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.4□□□□□ -0.1
SPTA1P02549 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC14.4□□□□□ -0.1
SPTA1P02549 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.4□□□□□ -0.11
SPTA1P02549 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SPTA1P02549 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SPTA1P02549 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms