Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
PTPN22Q9Y2R2 RBM38-205ENST00000440234 686 ntTSL 2 BASIC27.15■■□□□ 1.94
PTPN22Q9Y2R2 AC087623.3-201ENST00000607047 1098 ntBASIC27.15■■□□□ 1.94
PTPN22Q9Y2R2 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
PTPN22Q9Y2R2 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
PTPN22Q9Y2R2 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
PTPN22Q9Y2R2 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
PTPN22Q9Y2R2 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
PTPN22Q9Y2R2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC27.14■■□□□ 1.94
PTPN22Q9Y2R2 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PTPN22Q9Y2R2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PTPN22Q9Y2R2 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
PTPN22Q9Y2R2 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
PTPN22Q9Y2R2 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PTPN22Q9Y2R2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC27.12■■□□□ 1.93
PTPN22Q9Y2R2 AF213884.3-201ENST00000563833 479 ntBASIC27.12■■□□□ 1.93
PTPN22Q9Y2R2 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
PTPN22Q9Y2R2 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
PTPN22Q9Y2R2 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PTPN22Q9Y2R2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
PTPN22Q9Y2R2 PLD4-205ENST00000553861 667 ntTSL 2 BASIC27.11■■□□□ 1.93
PTPN22Q9Y2R2 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTPN22Q9Y2R2 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTPN22Q9Y2R2 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
PTPN22Q9Y2R2 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 GRAMD4P4-201ENST00000613563 1115 ntBASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PTPN22Q9Y2R2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTPN22Q9Y2R2 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 MIR939-201ENST00000401314 82 ntBASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 AF131216.4-201ENST00000638924 1588 ntBASIC27.08■■□□□ 1.93
PTPN22Q9Y2R2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTPN22Q9Y2R2 SRD5A1P1-201ENST00000442297 786 ntBASIC27.07■■□□□ 1.92
PTPN22Q9Y2R2 CLTA-206ENST00000466396 695 ntTSL 2 BASIC27.07■■□□□ 1.92
PTPN22Q9Y2R2 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.07■■□□□ 1.92
PTPN22Q9Y2R2 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PTPN22Q9Y2R2 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PTPN22Q9Y2R2 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.06■■□□□ 1.92
PTPN22Q9Y2R2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
PTPN22Q9Y2R2 DRD5P2-201ENST00000421395 2012 ntBASIC27.06■■□□□ 1.92
PTPN22Q9Y2R2 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.06■■□□□ 1.92
PTPN22Q9Y2R2 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
PTPN22Q9Y2R2 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC27.05■■□□□ 1.92
PTPN22Q9Y2R2 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.05■■□□□ 1.92
PTPN22Q9Y2R2 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
PTPN22Q9Y2R2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC27.04■■□□□ 1.92
PTPN22Q9Y2R2 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
PTPN22Q9Y2R2 AC090192.1-201ENST00000517740 490 ntBASIC27.03■■□□□ 1.92
PTPN22Q9Y2R2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
PTPN22Q9Y2R2 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 AP001330.3-201ENST00000520123 633 ntBASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 RARRES2P11-201ENST00000635158 484 ntBASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
PTPN22Q9Y2R2 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
PTPN22Q9Y2R2 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 MIR6722-201ENST00000617286 78 ntBASIC27■■□□□ 1.91
PTPN22Q9Y2R2 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
PTPN22Q9Y2R2 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
PTPN22Q9Y2R2 AL449106.1-201ENST00000608517 1980 ntBASIC26.99■■□□□ 1.91
PTPN22Q9Y2R2 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
PTPN22Q9Y2R2 AC091305.1-201ENST00000479476 895 ntBASIC26.99■■□□□ 1.91
PTPN22Q9Y2R2 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.99■■□□□ 1.91
PTPN22Q9Y2R2 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
PTPN22Q9Y2R2 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
PTPN22Q9Y2R2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PTPN22Q9Y2R2 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.98■■□□□ 1.91
PTPN22Q9Y2R2 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PTPN22Q9Y2R2 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.98■■□□□ 1.91
PTPN22Q9Y2R2 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
PTPN22Q9Y2R2 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms