Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
USE1Q9NZ43 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USE1Q9NZ43 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.71■■□□□ 1.07
USE1Q9NZ43 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
USE1Q9NZ43 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
USE1Q9NZ43 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USE1Q9NZ43 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USE1Q9NZ43 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.71■■□□□ 1.07
USE1Q9NZ43 AC008813.1-201ENST00000536597 885 ntBASIC21.71■■□□□ 1.07
USE1Q9NZ43 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
USE1Q9NZ43 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.7■■□□□ 1.07
USE1Q9NZ43 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.7■■□□□ 1.06
USE1Q9NZ43 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USE1Q9NZ43 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USE1Q9NZ43 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USE1Q9NZ43 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
USE1Q9NZ43 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 AC044849.2-201ENST00000606596 710 ntBASIC21.69■■□□□ 1.06
USE1Q9NZ43 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.69■■□□□ 1.06
USE1Q9NZ43 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USE1Q9NZ43 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
USE1Q9NZ43 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.68■■□□□ 1.06
USE1Q9NZ43 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.68■■□□□ 1.06
USE1Q9NZ43 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
USE1Q9NZ43 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USE1Q9NZ43 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
USE1Q9NZ43 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
USE1Q9NZ43 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.67■■□□□ 1.06
USE1Q9NZ43 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USE1Q9NZ43 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USE1Q9NZ43 RPS2P35-201ENST00000443417 897 ntBASIC21.67■■□□□ 1.06
USE1Q9NZ43 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.67■■□□□ 1.06
USE1Q9NZ43 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
USE1Q9NZ43 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USE1Q9NZ43 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USE1Q9NZ43 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
USE1Q9NZ43 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
USE1Q9NZ43 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
USE1Q9NZ43 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USE1Q9NZ43 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USE1Q9NZ43 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
USE1Q9NZ43 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.66■■□□□ 1.06
USE1Q9NZ43 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USE1Q9NZ43 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.65■■□□□ 1.06
USE1Q9NZ43 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
USE1Q9NZ43 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USE1Q9NZ43 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
USE1Q9NZ43 C9orf163-202ENST00000624034 2573 ntBASIC21.64■■□□□ 1.06
USE1Q9NZ43 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
USE1Q9NZ43 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
USE1Q9NZ43 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
USE1Q9NZ43 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.64■■□□□ 1.05
USE1Q9NZ43 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USE1Q9NZ43 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USE1Q9NZ43 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USE1Q9NZ43 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.63■■□□□ 1.05
USE1Q9NZ43 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.63■■□□□ 1.05
USE1Q9NZ43 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USE1Q9NZ43 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USE1Q9NZ43 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USE1Q9NZ43 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
USE1Q9NZ43 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.63■■□□□ 1.05
USE1Q9NZ43 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USE1Q9NZ43 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
USE1Q9NZ43 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 DUX4L29-201ENST00000425409 679 ntBASIC21.62■■□□□ 1.05
USE1Q9NZ43 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
USE1Q9NZ43 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 AL117328.2-201ENST00000624617 1940 ntBASIC21.62■■□□□ 1.05
USE1Q9NZ43 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USE1Q9NZ43 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.61■■□□□ 1.05
USE1Q9NZ43 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USE1Q9NZ43 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
USE1Q9NZ43 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USE1Q9NZ43 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
USE1Q9NZ43 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.61■■□□□ 1.05
USE1Q9NZ43 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms