Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.75■■□□□ 1.71
TRAIPQ9BWF2 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 AC135731.1-201ENST00000569415 2548 ntBASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRAIPQ9BWF2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
TRAIPQ9BWF2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.73■■□□□ 1.71
TRAIPQ9BWF2 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
TRAIPQ9BWF2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.73■■□□□ 1.71
TRAIPQ9BWF2 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
TRAIPQ9BWF2 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TRAIPQ9BWF2 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.72■■□□□ 1.71
TRAIPQ9BWF2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.72■■□□□ 1.71
TRAIPQ9BWF2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
TRAIPQ9BWF2 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
TRAIPQ9BWF2 FOXO3B-201ENST00000395675 1928 ntBASIC25.72■■□□□ 1.71
TRAIPQ9BWF2 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 KRT16P3-201ENST00000439127 1283 ntBASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.71■■□□□ 1.71
TRAIPQ9BWF2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.7■■□□□ 1.7
TRAIPQ9BWF2 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
TRAIPQ9BWF2 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.7■■□□□ 1.7
TRAIPQ9BWF2 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.7■■□□□ 1.7
TRAIPQ9BWF2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 AC096887.2-201ENST00000623443 1957 ntBASIC25.69■■□□□ 1.7
TRAIPQ9BWF2 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
TRAIPQ9BWF2 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
TRAIPQ9BWF2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.67■■□□□ 1.7
TRAIPQ9BWF2 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.67■■□□□ 1.7
TRAIPQ9BWF2 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.67■■□□□ 1.7
TRAIPQ9BWF2 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
TRAIPQ9BWF2 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TRAIPQ9BWF2 AC145676.1-201ENST00000514988 2004 ntBASIC25.66■■□□□ 1.7
TRAIPQ9BWF2 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.66■■□□□ 1.7
TRAIPQ9BWF2 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 AC097639.1-201ENST00000565519 1891 ntBASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TRAIPQ9BWF2 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 TSPY9P-201ENST00000440215 945 ntBASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 TSPY11P-201ENST00000442607 1045 ntBASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
TRAIPQ9BWF2 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
TRAIPQ9BWF2 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.63■■□□□ 1.69
TRAIPQ9BWF2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TRAIPQ9BWF2 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.63■■□□□ 1.69
TRAIPQ9BWF2 AF131216.4-201ENST00000638924 1588 ntBASIC25.63■■□□□ 1.69
TRAIPQ9BWF2 ERN1-208ENST00000606895 2068 ntBASIC25.63■■□□□ 1.69
TRAIPQ9BWF2 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.63■■□□□ 1.69
TRAIPQ9BWF2 AC010501.1-201ENST00000606270 1962 ntBASIC25.62■■□□□ 1.69
TRAIPQ9BWF2 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
TRAIPQ9BWF2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.62■■□□□ 1.69
TRAIPQ9BWF2 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TRAIPQ9BWF2 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.62■■□□□ 1.69
TRAIPQ9BWF2 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms