Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC39.85■■■■□ 3.97
IFT140Q96RY7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC39.85■■■■□ 3.97
IFT140Q96RY7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC39.84■■■■□ 3.97
IFT140Q96RY7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC39.84■■■■□ 3.97
IFT140Q96RY7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
IFT140Q96RY7 AC142472.1-201ENST00000612013 1741 ntBASIC39.84■■■■□ 3.97
IFT140Q96RY7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC39.83■■■■□ 3.97
IFT140Q96RY7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC39.83■■■■□ 3.97
IFT140Q96RY7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC39.83■■■■□ 3.97
IFT140Q96RY7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC39.82■■■■□ 3.97
IFT140Q96RY7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC39.81■■■■□ 3.96
IFT140Q96RY7 DUX4L19-201ENST00000557448 1267 ntBASIC39.81■■■■□ 3.96
IFT140Q96RY7 MIR4767-201ENST00000582827 78 ntBASIC39.81■■■■□ 3.96
IFT140Q96RY7 RASA4CP-201ENST00000424092 1398 ntBASIC39.81■■■■□ 3.96
IFT140Q96RY7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC39.81■■■■□ 3.96
IFT140Q96RY7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC39.81■■■■□ 3.96
IFT140Q96RY7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC39.8■■■■□ 3.96
IFT140Q96RY7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC39.8■■■■□ 3.96
IFT140Q96RY7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC39.79■■■■□ 3.96
IFT140Q96RY7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC39.79■■■■□ 3.96
IFT140Q96RY7 MAG-206ENST00000597035 542 ntTSL 4 BASIC39.79■■■■□ 3.96
IFT140Q96RY7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
IFT140Q96RY7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC39.78■■■■□ 3.96
IFT140Q96RY7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC39.77■■■■□ 3.96
IFT140Q96RY7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC39.77■■■■□ 3.96
IFT140Q96RY7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC39.77■■■■□ 3.96
IFT140Q96RY7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC39.77■■■■□ 3.96
IFT140Q96RY7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC39.76■■■■□ 3.96
IFT140Q96RY7 AC027682.1-201ENST00000562846 899 ntBASIC39.76■■■■□ 3.96
IFT140Q96RY7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC39.76■■■■□ 3.96
IFT140Q96RY7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC39.75■■■■□ 3.95
IFT140Q96RY7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
IFT140Q96RY7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC39.75■■■■□ 3.95
IFT140Q96RY7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC39.75■■■■□ 3.95
IFT140Q96RY7 AC004448.1-201ENST00000458332 883 ntBASIC39.75■■■■□ 3.95
IFT140Q96RY7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC39.75■■■■□ 3.95
IFT140Q96RY7 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC39.74■■■■□ 3.95
IFT140Q96RY7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC39.74■■■■□ 3.95
IFT140Q96RY7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC39.74■■■■□ 3.95
IFT140Q96RY7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC39.73■■■■□ 3.95
IFT140Q96RY7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC39.73■■■■□ 3.95
IFT140Q96RY7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC39.72■■■■□ 3.95
IFT140Q96RY7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
IFT140Q96RY7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC39.71■■■■□ 3.95
IFT140Q96RY7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC39.71■■■■□ 3.95
IFT140Q96RY7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC39.71■■■■□ 3.95
IFT140Q96RY7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC39.71■■■■□ 3.95
IFT140Q96RY7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC39.7■■■■□ 3.95
IFT140Q96RY7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC39.7■■■■□ 3.95
IFT140Q96RY7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC39.7■■■■□ 3.95
IFT140Q96RY7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC39.69■■■■□ 3.94
IFT140Q96RY7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC39.69■■■■□ 3.94
IFT140Q96RY7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC39.69■■■■□ 3.94
IFT140Q96RY7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC39.69■■■■□ 3.94
IFT140Q96RY7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC39.68■■■■□ 3.94
IFT140Q96RY7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
IFT140Q96RY7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC39.68■■■■□ 3.94
IFT140Q96RY7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC39.68■■■■□ 3.94
IFT140Q96RY7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC39.68■■■■□ 3.94
IFT140Q96RY7 IKBKGP1-201ENST00000612193 1073 ntBASIC39.68■■■■□ 3.94
IFT140Q96RY7 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC39.67■■■■□ 3.94
IFT140Q96RY7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC39.67■■■■□ 3.94
IFT140Q96RY7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC39.67■■■■□ 3.94
IFT140Q96RY7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC39.67■■■■□ 3.94
IFT140Q96RY7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC39.67■■■■□ 3.94
IFT140Q96RY7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC39.67■■■■□ 3.94
IFT140Q96RY7 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC39.66■■■■□ 3.94
IFT140Q96RY7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC39.66■■■■□ 3.94
IFT140Q96RY7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC39.66■■■■□ 3.94
IFT140Q96RY7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC39.65■■■■□ 3.94
IFT140Q96RY7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC39.65■■■■□ 3.94
IFT140Q96RY7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
IFT140Q96RY7 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC39.65■■■■□ 3.94
IFT140Q96RY7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC39.65■■■■□ 3.94
IFT140Q96RY7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC39.64■■■■□ 3.94
IFT140Q96RY7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC39.64■■■■□ 3.94
IFT140Q96RY7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC39.64■■■■□ 3.94
IFT140Q96RY7 IRS3P-201ENST00000223076 1006 ntBASIC39.63■■■■□ 3.94
IFT140Q96RY7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC39.63■■■■□ 3.94
IFT140Q96RY7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.94
IFT140Q96RY7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC39.63■■■■□ 3.93
IFT140Q96RY7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
IFT140Q96RY7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC39.62■■■■□ 3.93
IFT140Q96RY7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC39.62■■■■□ 3.93
IFT140Q96RY7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC39.62■■■■□ 3.93
IFT140Q96RY7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC39.62■■■■□ 3.93
IFT140Q96RY7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
IFT140Q96RY7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC39.62■■■■□ 3.93
IFT140Q96RY7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC39.62■■■■□ 3.93
IFT140Q96RY7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
IFT140Q96RY7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
IFT140Q96RY7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC39.61■■■■□ 3.93
IFT140Q96RY7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
IFT140Q96RY7 SYT6-210ENST00000641643 1587 ntBASIC39.61■■■■□ 3.93
IFT140Q96RY7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
IFT140Q96RY7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC39.6■■■■□ 3.93
IFT140Q96RY7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC39.6■■■■□ 3.93
IFT140Q96RY7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC39.6■■■■□ 3.93
IFT140Q96RY7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC39.6■■■■□ 3.93
IFT140Q96RY7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC39.59■■■■□ 3.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms