Protein–RNA interactions for Protein: Q92890

UFD1, Ubiquitin recognition factor in ER-associated degradation protein 1, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1Q92890 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UFD1Q92890 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UFD1Q92890 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.85■□□□□ 0.93
UFD1Q92890 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UFD1Q92890 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UFD1Q92890 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
UFD1Q92890 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.84■□□□□ 0.93
UFD1Q92890 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UFD1Q92890 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UFD1Q92890 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
UFD1Q92890 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UFD1Q92890 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
UFD1Q92890 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UFD1Q92890 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
UFD1Q92890 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UFD1Q92890 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UFD1Q92890 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UFD1Q92890 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
UFD1Q92890 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.83■□□□□ 0.92
UFD1Q92890 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UFD1Q92890 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UFD1Q92890 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.82■□□□□ 0.92
UFD1Q92890 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.82■□□□□ 0.92
UFD1Q92890 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 MIR6089-201ENST00000616698 64 ntBASIC20.82■□□□□ 0.92
UFD1Q92890 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
UFD1Q92890 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UFD1Q92890 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
UFD1Q92890 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UFD1Q92890 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
UFD1Q92890 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.81■□□□□ 0.92
UFD1Q92890 AL162393.1-201ENST00000437852 946 ntBASIC20.81■□□□□ 0.92
UFD1Q92890 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.81■□□□□ 0.92
UFD1Q92890 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.81■□□□□ 0.92
UFD1Q92890 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.81■□□□□ 0.92
UFD1Q92890 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UFD1Q92890 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 C9orf163-202ENST00000624034 2573 ntBASIC20.8■□□□□ 0.92
UFD1Q92890 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UFD1Q92890 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.79■□□□□ 0.92
UFD1Q92890 CLDN5-201ENST00000403084 2357 ntBASIC20.79■□□□□ 0.92
UFD1Q92890 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
UFD1Q92890 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
UFD1Q92890 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UFD1Q92890 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
UFD1Q92890 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.78■□□□□ 0.92
UFD1Q92890 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L13-201ENST00000554103 1267 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L15-201ENST00000611059 1267 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L23-201ENST00000615195 1269 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L24-201ENST00000617576 1269 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 LINC01971-201ENST00000617888 1048 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L22-201ENST00000618238 1269 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L20-201ENST00000619712 1269 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L21-201ENST00000622058 1269 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L10-201ENST00000622460 1267 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 DUX4L25-201ENST00000624915 1269 ntBASIC20.78■□□□□ 0.92
UFD1Q92890 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.78■□□□□ 0.92
UFD1Q92890 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UFD1Q92890 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.77■□□□□ 0.92
UFD1Q92890 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.77■□□□□ 0.92
UFD1Q92890 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.77■□□□□ 0.92
UFD1Q92890 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UFD1Q92890 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
UFD1Q92890 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.77■□□□□ 0.91
UFD1Q92890 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
UFD1Q92890 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
UFD1Q92890 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.76■□□□□ 0.91
UFD1Q92890 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
UFD1Q92890 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
UFD1Q92890 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms