Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 AL136162.1-201ENST00000607711 1078 ntBASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 MIR6722-201ENST00000617286 78 ntBASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 AC135279.3-201ENST00000610945 1311 ntBASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SLC44A3Q8N4M1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 SNX5-217ENST00000606557 1087 ntBASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SLC44A3Q8N4M1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SLC44A3Q8N4M1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SLC44A3Q8N4M1 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SLC44A3Q8N4M1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SLC44A3Q8N4M1 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SLC44A3Q8N4M1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
SLC44A3Q8N4M1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
SLC44A3Q8N4M1 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.27■■□□□ 1.48
SLC44A3Q8N4M1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.27■■□□□ 1.48
SLC44A3Q8N4M1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
SLC44A3Q8N4M1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SLC44A3Q8N4M1 FOXO3B-201ENST00000395675 1928 ntBASIC24.25■■□□□ 1.47
SLC44A3Q8N4M1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SLC44A3Q8N4M1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.25■■□□□ 1.47
SLC44A3Q8N4M1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.25■■□□□ 1.47
SLC44A3Q8N4M1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.25■■□□□ 1.47
SLC44A3Q8N4M1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SLC44A3Q8N4M1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 EDA-201ENST00000338901 1233 ntBASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 AL355001.2-201ENST00000620617 1191 ntBASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SLC44A3Q8N4M1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SLC44A3Q8N4M1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SLC44A3Q8N4M1 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC24.23■■□□□ 1.47
SLC44A3Q8N4M1 AC104564.3-201ENST00000582367 638 ntBASIC24.23■■□□□ 1.47
SLC44A3Q8N4M1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
SLC44A3Q8N4M1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
SLC44A3Q8N4M1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SLC44A3Q8N4M1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SLC44A3Q8N4M1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
SLC44A3Q8N4M1 AC024257.2-201ENST00000549699 147 ntBASIC24.22■■□□□ 1.47
SLC44A3Q8N4M1 MIR5787-201ENST00000611784 55 ntBASIC24.22■■□□□ 1.47
SLC44A3Q8N4M1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.21■■□□□ 1.47
SLC44A3Q8N4M1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SLC44A3Q8N4M1 SRD5A1P1-201ENST00000442297 786 ntBASIC24.21■■□□□ 1.47
SLC44A3Q8N4M1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.21■■□□□ 1.47
SLC44A3Q8N4M1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SLC44A3Q8N4M1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SLC44A3Q8N4M1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.2■■□□□ 1.46
SLC44A3Q8N4M1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
SLC44A3Q8N4M1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
SLC44A3Q8N4M1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SLC44A3Q8N4M1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
SLC44A3Q8N4M1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SLC44A3Q8N4M1 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SLC44A3Q8N4M1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.19■■□□□ 1.46
SLC44A3Q8N4M1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SLC44A3Q8N4M1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 AC090877.2-201ENST00000558441 1738 ntBASIC24.18■■□□□ 1.46
SLC44A3Q8N4M1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
SLC44A3Q8N4M1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SLC44A3Q8N4M1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC24.17■■□□□ 1.46
SLC44A3Q8N4M1 AL136967.2-201ENST00000623968 743 ntBASIC24.17■■□□□ 1.46
SLC44A3Q8N4M1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
SLC44A3Q8N4M1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms