Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.3■■□□□ 1
NIPAL3Q6P499 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NIPAL3Q6P499 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
NIPAL3Q6P499 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NIPAL3Q6P499 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NIPAL3Q6P499 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
NIPAL3Q6P499 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NIPAL3Q6P499 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
NIPAL3Q6P499 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.29■■□□□ 1
NIPAL3Q6P499 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.29■■□□□ 1
NIPAL3Q6P499 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.29■■□□□ 1
NIPAL3Q6P499 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
NIPAL3Q6P499 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NIPAL3Q6P499 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.28■■□□□ 1
NIPAL3Q6P499 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NIPAL3Q6P499 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
NIPAL3Q6P499 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.28■■□□□ 1
NIPAL3Q6P499 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NIPAL3Q6P499 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.27■■□□□ 1
NIPAL3Q6P499 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NIPAL3Q6P499 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.27■■□□□ 1
NIPAL3Q6P499 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.27■■□□□ 1
NIPAL3Q6P499 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.27■■□□□ 1
NIPAL3Q6P499 SPCS2P3-201ENST00000500401 656 ntBASIC21.27■■□□□ 1
NIPAL3Q6P499 AC018755.3-202ENST00000596210 929 ntBASIC21.27■■□□□ 1
NIPAL3Q6P499 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NIPAL3Q6P499 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 AC129492.7-201ENST00000622992 756 ntBASIC21.26■□□□□ 0.99
NIPAL3Q6P499 LINC00543-201ENST00000567234 1845 ntBASIC21.26■□□□□ 0.99
NIPAL3Q6P499 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NIPAL3Q6P499 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 DUX4L9-201ENST00000449051 1259 ntBASIC21.25■□□□□ 0.99
NIPAL3Q6P499 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NIPAL3Q6P499 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NIPAL3Q6P499 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NIPAL3Q6P499 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 MIR6765-201ENST00000614092 87 ntBASIC21.22■□□□□ 0.99
NIPAL3Q6P499 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.22■□□□□ 0.99
NIPAL3Q6P499 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 AC141586.4-201ENST00000624558 1573 ntBASIC21.21■□□□□ 0.99
NIPAL3Q6P499 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NIPAL3Q6P499 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 KRT18P10-201ENST00000388836 1287 ntBASIC21.2■□□□□ 0.98
NIPAL3Q6P499 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NIPAL3Q6P499 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.19■□□□□ 0.98
NIPAL3Q6P499 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms