Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTCHD3Q3KNS1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD3Q3KNS1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD3Q3KNS1 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTCHD3Q3KNS1 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PTCHD3Q3KNS1 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PTCHD3Q3KNS1 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PTCHD3Q3KNS1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.91■■□□□ 1.26
PTCHD3Q3KNS1 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.91■■□□□ 1.26
PTCHD3Q3KNS1 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PTCHD3Q3KNS1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 FOXO3B-201ENST00000395675 1928 ntBASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 AC103834.1-201ENST00000520383 144 ntBASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 AL451085.2-201ENST00000605085 799 ntBASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.9■■□□□ 1.26
PTCHD3Q3KNS1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PTCHD3Q3KNS1 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.89■■□□□ 1.26
PTCHD3Q3KNS1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PTCHD3Q3KNS1 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.89■■□□□ 1.26
PTCHD3Q3KNS1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 YBX1P4-201ENST00000392794 808 ntBASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 AC087393.1-201ENST00000582896 145 ntBASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 AP003733.4-201ENST00000623785 1697 ntBASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
PTCHD3Q3KNS1 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD3Q3KNS1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD3Q3KNS1 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
PTCHD3Q3KNS1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD3Q3KNS1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
PTCHD3Q3KNS1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.87■■□□□ 1.25
PTCHD3Q3KNS1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PTCHD3Q3KNS1 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
PTCHD3Q3KNS1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PTCHD3Q3KNS1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
PTCHD3Q3KNS1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 AL139125.2-201ENST00000623134 1869 ntBASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 AL035685.1-201ENST00000636663 812 ntBASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PTCHD3Q3KNS1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 MIR6089-201ENST00000616698 64 ntBASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PTCHD3Q3KNS1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
PTCHD3Q3KNS1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.83■■□□□ 1.24
PTCHD3Q3KNS1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
PTCHD3Q3KNS1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD3Q3KNS1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD3Q3KNS1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD3Q3KNS1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD3Q3KNS1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD3Q3KNS1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
PTCHD3Q3KNS1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 MIR4508-201ENST00000584178 70 ntBASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms