Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LSM6P62312 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM6P62312 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM6P62312 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LSM6P62312 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LSM6P62312 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM6P62312 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM6P62312 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LSM6P62312 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.6■□□□□ 0.89
LSM6P62312 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM6P62312 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LSM6P62312 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM6P62312 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LSM6P62312 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 AC141586.4-201ENST00000624558 1573 ntBASIC20.59■□□□□ 0.89
LSM6P62312 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
LSM6P62312 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.59■□□□□ 0.89
LSM6P62312 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 LINC01124-201ENST00000409786 2117 ntBASIC20.59■□□□□ 0.89
LSM6P62312 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM6P62312 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.59■□□□□ 0.89
LSM6P62312 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LSM6P62312 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM6P62312 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.58■□□□□ 0.89
LSM6P62312 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM6P62312 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM6P62312 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.58■□□□□ 0.89
LSM6P62312 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM6P62312 AL592295.1-201ENST00000400984 884 ntBASIC20.58■□□□□ 0.89
LSM6P62312 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.58■□□□□ 0.89
LSM6P62312 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
LSM6P62312 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM6P62312 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LSM6P62312 LINC00543-201ENST00000567234 1845 ntBASIC20.57■□□□□ 0.88
LSM6P62312 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM6P62312 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM6P62312 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM6P62312 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM6P62312 LONRF2P2-201ENST00000439212 571 ntBASIC20.57■□□□□ 0.88
LSM6P62312 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.57■□□□□ 0.88
LSM6P62312 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM6P62312 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.56■□□□□ 0.88
LSM6P62312 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LSM6P62312 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.56■□□□□ 0.88
LSM6P62312 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.56■□□□□ 0.88
LSM6P62312 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM6P62312 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.56■□□□□ 0.88
LSM6P62312 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM6P62312 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
LSM6P62312 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM6P62312 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LSM6P62312 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM6P62312 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM6P62312 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.55■□□□□ 0.88
LSM6P62312 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.55■□□□□ 0.88
LSM6P62312 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM6P62312 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LSM6P62312 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
LSM6P62312 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.54■□□□□ 0.88
LSM6P62312 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LSM6P62312 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.54■□□□□ 0.88
LSM6P62312 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM6P62312 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.53■□□□□ 0.88
LSM6P62312 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LSM6P62312 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LSM6P62312 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LSM6P62312 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM6P62312 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM6P62312 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM6P62312 AC019171.1-201ENST00000601251 1056 ntBASIC20.52■□□□□ 0.88
LSM6P62312 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM6P62312 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
LSM6P62312 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.87
LSM6P62312 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LSM6P62312 AC090877.2-201ENST00000558441 1738 ntBASIC20.51■□□□□ 0.87
LSM6P62312 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM6P62312 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM6P62312 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM6P62312 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
LSM6P62312 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM6P62312 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.51■□□□□ 0.87
LSM6P62312 HLA-L-211ENST00000482052 1765 ntBASIC20.51■□□□□ 0.87
LSM6P62312 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms