Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLRN1P58418 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.89■□□□□ 0.93
CLRN1P58418 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.89■□□□□ 0.93
CLRN1P58418 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLRN1P58418 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLRN1P58418 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLRN1P58418 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.88■□□□□ 0.93
CLRN1P58418 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CLRN1P58418 DUX4L18-201ENST00000553347 1267 ntBASIC20.88■□□□□ 0.93
CLRN1P58418 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.88■□□□□ 0.93
CLRN1P58418 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CLRN1P58418 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.88■□□□□ 0.93
CLRN1P58418 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.88■□□□□ 0.93
CLRN1P58418 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLRN1P58418 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLRN1P58418 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CLRN1P58418 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN1P58418 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.87■□□□□ 0.93
CLRN1P58418 MIR6089-201ENST00000616698 64 ntBASIC20.87■□□□□ 0.93
CLRN1P58418 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.87■□□□□ 0.93
CLRN1P58418 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN1P58418 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN1P58418 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN1P58418 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN1P58418 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLRN1P58418 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 AL139125.2-201ENST00000623134 1869 ntBASIC20.86■□□□□ 0.93
CLRN1P58418 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 AC139795.1-202ENST00000500444 432 ntBASIC20.86■□□□□ 0.93
CLRN1P58418 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.86■□□□□ 0.93
CLRN1P58418 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.86■□□□□ 0.93
CLRN1P58418 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLRN1P58418 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN1P58418 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN1P58418 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN1P58418 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN1P58418 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.85■□□□□ 0.93
CLRN1P58418 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN1P58418 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.85■□□□□ 0.93
CLRN1P58418 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.85■□□□□ 0.93
CLRN1P58418 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CLRN1P58418 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLRN1P58418 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLRN1P58418 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLRN1P58418 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.84■□□□□ 0.93
CLRN1P58418 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.84■□□□□ 0.93
CLRN1P58418 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.84■□□□□ 0.93
CLRN1P58418 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLRN1P58418 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLRN1P58418 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.84■□□□□ 0.93
CLRN1P58418 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CLRN1P58418 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.83■□□□□ 0.93
CLRN1P58418 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.83■□□□□ 0.93
CLRN1P58418 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN1P58418 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLRN1P58418 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.83■□□□□ 0.92
CLRN1P58418 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLRN1P58418 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLRN1P58418 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN1P58418 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN1P58418 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN1P58418 AL592295.1-201ENST00000400984 884 ntBASIC20.82■□□□□ 0.92
CLRN1P58418 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CLRN1P58418 BHLHE23-202ENST00000612929 1109 ntBASIC20.82■□□□□ 0.92
CLRN1P58418 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
CLRN1P58418 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN1P58418 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN1P58418 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN1P58418 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN1P58418 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN1P58418 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN1P58418 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.81■□□□□ 0.92
CLRN1P58418 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.81■□□□□ 0.92
CLRN1P58418 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.81■□□□□ 0.92
CLRN1P58418 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN1P58418 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN1P58418 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN1P58418 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN1P58418 AC004987.1-201ENST00000428627 508 ntBASIC20.8■□□□□ 0.92
CLRN1P58418 ATP5G2P3-201ENST00000429083 425 ntBASIC20.8■□□□□ 0.92
CLRN1P58418 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN1P58418 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN1P58418 LINC01124-201ENST00000409786 2117 ntBASIC20.8■□□□□ 0.92
CLRN1P58418 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN1P58418 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.79■□□□□ 0.92
CLRN1P58418 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms