Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
CIITAP33076 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CIITAP33076 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
CIITAP33076 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CIITAP33076 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.6■■□□□ 1.85
CIITAP33076 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 MIR4281-201ENST00000580852 62 ntBASIC26.6■■□□□ 1.85
CIITAP33076 MIR6089-201ENST00000616698 64 ntBASIC26.6■■□□□ 1.85
CIITAP33076 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.6■■□□□ 1.85
CIITAP33076 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CIITAP33076 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CIITAP33076 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.59■■□□□ 1.85
CIITAP33076 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
CIITAP33076 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CIITAP33076 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CIITAP33076 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CIITAP33076 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CIITAP33076 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.58■■□□□ 1.85
CIITAP33076 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CIITAP33076 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.58■■□□□ 1.85
CIITAP33076 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CIITAP33076 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CIITAP33076 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.58■■□□□ 1.85
CIITAP33076 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CIITAP33076 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CIITAP33076 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CIITAP33076 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CIITAP33076 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CIITAP33076 AC137630.3-201ENST00000607245 391 ntBASIC26.57■■□□□ 1.84
CIITAP33076 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CIITAP33076 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.57■■□□□ 1.84
CIITAP33076 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
CIITAP33076 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.56■■□□□ 1.84
CIITAP33076 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CIITAP33076 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.56■■□□□ 1.84
CIITAP33076 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CIITAP33076 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.55■■□□□ 1.84
CIITAP33076 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
CIITAP33076 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.55■■□□□ 1.84
CIITAP33076 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.55■■□□□ 1.84
CIITAP33076 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CIITAP33076 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
CIITAP33076 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.55■■□□□ 1.84
CIITAP33076 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CIITAP33076 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.54■■□□□ 1.84
CIITAP33076 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
CIITAP33076 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.54■■□□□ 1.84
CIITAP33076 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.54■■□□□ 1.84
CIITAP33076 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.54■■□□□ 1.84
CIITAP33076 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.54■■□□□ 1.84
CIITAP33076 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
CIITAP33076 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.54■■□□□ 1.84
CIITAP33076 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CIITAP33076 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CIITAP33076 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
CIITAP33076 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CIITAP33076 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CIITAP33076 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.53■■□□□ 1.84
CIITAP33076 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CIITAP33076 Z92544.1-202ENST00000571933 1220 ntBASIC26.53■■□□□ 1.84
CIITAP33076 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CIITAP33076 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CIITAP33076 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
CIITAP33076 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CIITAP33076 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CIITAP33076 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
CIITAP33076 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CIITAP33076 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
CIITAP33076 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CIITAP33076 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CIITAP33076 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CIITAP33076 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.52■■□□□ 1.84
CIITAP33076 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CIITAP33076 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.52■■□□□ 1.84
CIITAP33076 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CIITAP33076 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
CIITAP33076 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.51■■□□□ 1.84
CIITAP33076 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CIITAP33076 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.51■■□□□ 1.83
CIITAP33076 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CIITAP33076 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CIITAP33076 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CIITAP33076 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
CIITAP33076 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CIITAP33076 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CIITAP33076 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.5■■□□□ 1.83
CIITAP33076 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CIITAP33076 AC022211.4-201ENST00000625094 2161 ntBASIC26.5■■□□□ 1.83
CIITAP33076 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CIITAP33076 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CIITAP33076 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CIITAP33076 AF131216.4-201ENST00000638924 1588 ntBASIC26.5■■□□□ 1.83
CIITAP33076 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CIITAP33076 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
CIITAP33076 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms