Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC27.75■■■□□ 2.03
HMGB1P09429 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
HMGB1P09429 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC27.75■■■□□ 2.03
HMGB1P09429 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC27.74■■■□□ 2.03
HMGB1P09429 AC019171.1-201ENST00000601251 1056 ntBASIC27.74■■■□□ 2.03
HMGB1P09429 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.74■■■□□ 2.03
HMGB1P09429 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC27.74■■■□□ 2.03
HMGB1P09429 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
HMGB1P09429 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
HMGB1P09429 ATP5G2P3-201ENST00000429083 425 ntBASIC27.73■■■□□ 2.03
HMGB1P09429 DUX4L18-201ENST00000553347 1267 ntBASIC27.73■■■□□ 2.03
HMGB1P09429 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
HMGB1P09429 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
HMGB1P09429 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
HMGB1P09429 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.73■■■□□ 2.03
HMGB1P09429 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
HMGB1P09429 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
HMGB1P09429 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
HMGB1P09429 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
HMGB1P09429 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
HMGB1P09429 PREB-202ENST00000406567 1910 ntTSL 5 BASIC27.71■■■□□ 2.03
HMGB1P09429 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC27.71■■■□□ 2.03
HMGB1P09429 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.71■■■□□ 2.03
HMGB1P09429 AC004987.1-201ENST00000428627 508 ntBASIC27.71■■■□□ 2.03
HMGB1P09429 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
HMGB1P09429 AC093323.1-202ENST00000635031 2045 ntBASIC27.7■■■□□ 2.03
HMGB1P09429 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
HMGB1P09429 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
HMGB1P09429 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
HMGB1P09429 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.7■■■□□ 2.02
HMGB1P09429 AC139795.1-202ENST00000500444 432 ntBASIC27.7■■■□□ 2.02
HMGB1P09429 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
HMGB1P09429 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC27.7■■■□□ 2.02
HMGB1P09429 SSSCA1-AS1-201ENST00000567594 614 ntBASIC27.7■■■□□ 2.02
HMGB1P09429 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.02
HMGB1P09429 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC27.7■■■□□ 2.02
HMGB1P09429 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
HMGB1P09429 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC27.69■■■□□ 2.02
HMGB1P09429 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
HMGB1P09429 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC27.69■■■□□ 2.02
HMGB1P09429 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.69■■■□□ 2.02
HMGB1P09429 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.69■■■□□ 2.02
HMGB1P09429 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
HMGB1P09429 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
HMGB1P09429 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 TSPY13P-201ENST00000338964 914 ntBASIC27.68■■■□□ 2.02
HMGB1P09429 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC27.68■■■□□ 2.02
HMGB1P09429 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
HMGB1P09429 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
HMGB1P09429 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
HMGB1P09429 LINC01124-201ENST00000409786 2117 ntBASIC27.67■■■□□ 2.02
HMGB1P09429 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
HMGB1P09429 AC074183.2-201ENST00000623112 922 ntBASIC27.67■■■□□ 2.02
HMGB1P09429 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
HMGB1P09429 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.67■■■□□ 2.02
HMGB1P09429 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
HMGB1P09429 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
HMGB1P09429 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.67■■■□□ 2.02
HMGB1P09429 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC27.67■■■□□ 2.02
HMGB1P09429 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
HMGB1P09429 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
HMGB1P09429 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
HMGB1P09429 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.66■■■□□ 2.02
HMGB1P09429 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
HMGB1P09429 AC141586.4-201ENST00000624558 1573 ntBASIC27.65■■■□□ 2.02
HMGB1P09429 AC090877.2-201ENST00000558441 1738 ntBASIC27.65■■■□□ 2.02
HMGB1P09429 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
HMGB1P09429 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC27.65■■■□□ 2.02
HMGB1P09429 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.65■■■□□ 2.02
HMGB1P09429 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
HMGB1P09429 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
HMGB1P09429 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.65■■■□□ 2.02
HMGB1P09429 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
HMGB1P09429 LINC00543-201ENST00000567234 1845 ntBASIC27.64■■■□□ 2.02
HMGB1P09429 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.64■■■□□ 2.02
HMGB1P09429 AC022616.5-201ENST00000518796 181 ntBASIC27.64■■■□□ 2.02
HMGB1P09429 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
HMGB1P09429 AC012354.3-201ENST00000623734 483 ntBASIC27.64■■■□□ 2.02
HMGB1P09429 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
HMGB1P09429 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
HMGB1P09429 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms