Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC3O43542 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
XRCC3O43542 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC3O43542 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC3O43542 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC3O43542 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
XRCC3O43542 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC3O43542 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.07■□□□□ 0.8
XRCC3O43542 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC3O43542 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.07■□□□□ 0.8
XRCC3O43542 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.07■□□□□ 0.8
XRCC3O43542 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC3O43542 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC3O43542 C9orf163-202ENST00000624034 2573 ntBASIC20.06■□□□□ 0.8
XRCC3O43542 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC3O43542 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
XRCC3O43542 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
XRCC3O43542 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.06■□□□□ 0.8
XRCC3O43542 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC3O43542 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC3O43542 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC3O43542 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.05■□□□□ 0.8
XRCC3O43542 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.05■□□□□ 0.8
XRCC3O43542 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
XRCC3O43542 CLDN5-201ENST00000403084 2357 ntBASIC20.05■□□□□ 0.8
XRCC3O43542 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC3O43542 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
XRCC3O43542 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC3O43542 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC3O43542 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.04■□□□□ 0.8
XRCC3O43542 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC3O43542 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.04■□□□□ 0.8
XRCC3O43542 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC3O43542 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC3O43542 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC3O43542 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
XRCC3O43542 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
XRCC3O43542 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
XRCC3O43542 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
XRCC3O43542 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
XRCC3O43542 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.02■□□□□ 0.8
XRCC3O43542 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.02■□□□□ 0.8
XRCC3O43542 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
XRCC3O43542 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
XRCC3O43542 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.02■□□□□ 0.8
XRCC3O43542 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
XRCC3O43542 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
XRCC3O43542 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
XRCC3O43542 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
XRCC3O43542 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
XRCC3O43542 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
XRCC3O43542 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
XRCC3O43542 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
XRCC3O43542 HLA-V-202ENST00000446817 847 ntBASIC20.01■□□□□ 0.79
XRCC3O43542 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
XRCC3O43542 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
XRCC3O43542 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
XRCC3O43542 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
XRCC3O43542 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
XRCC3O43542 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20■□□□□ 0.79
XRCC3O43542 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20■□□□□ 0.79
XRCC3O43542 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
XRCC3O43542 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
XRCC3O43542 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
XRCC3O43542 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
XRCC3O43542 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
XRCC3O43542 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
XRCC3O43542 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
XRCC3O43542 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
XRCC3O43542 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC19.99■□□□□ 0.79
XRCC3O43542 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.99■□□□□ 0.79
XRCC3O43542 AC126177.7-201ENST00000547904 679 ntBASIC19.99■□□□□ 0.79
XRCC3O43542 AL117328.2-201ENST00000624617 1940 ntBASIC19.99■□□□□ 0.79
XRCC3O43542 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
XRCC3O43542 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
XRCC3O43542 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
XRCC3O43542 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
XRCC3O43542 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.98■□□□□ 0.79
XRCC3O43542 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
XRCC3O43542 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.98■□□□□ 0.79
XRCC3O43542 HLA-L-211ENST00000482052 1765 ntBASIC19.98■□□□□ 0.79
XRCC3O43542 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
XRCC3O43542 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
XRCC3O43542 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
XRCC3O43542 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms