Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC65Q8IXS2 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC65Q8IXS2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CCDC65Q8IXS2 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.89■■■□□ 2.7
CCDC65Q8IXS2 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC65Q8IXS2 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC65Q8IXS2 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC65Q8IXS2 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC65Q8IXS2 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.75■■■□□ 2.67
CCDC65Q8IXS2 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
CCDC65Q8IXS2 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC65Q8IXS2 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.74■■■□□ 2.67
CCDC65Q8IXS2 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.74■■■□□ 2.67
CCDC65Q8IXS2 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC65Q8IXS2 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC65Q8IXS2 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC65Q8IXS2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC65Q8IXS2 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
CCDC65Q8IXS2 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC65Q8IXS2 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC65Q8IXS2 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC65Q8IXS2 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC65Q8IXS2 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC65Q8IXS2 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.62■■■□□ 2.65
CCDC65Q8IXS2 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC65Q8IXS2 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
CCDC65Q8IXS2 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC65Q8IXS2 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC65Q8IXS2 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC65Q8IXS2 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC65Q8IXS2 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.55■■■□□ 2.64
CCDC65Q8IXS2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC65Q8IXS2 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.54■■■□□ 2.64
CCDC65Q8IXS2 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.53■■■□□ 2.64
CCDC65Q8IXS2 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC65Q8IXS2 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC65Q8IXS2 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC65Q8IXS2 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CCDC65Q8IXS2 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC65Q8IXS2 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC65Q8IXS2 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC65Q8IXS2 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC65Q8IXS2 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.46■■■□□ 2.63
CCDC65Q8IXS2 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC65Q8IXS2 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC65Q8IXS2 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC65Q8IXS2 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC65Q8IXS2 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CCDC65Q8IXS2 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC65Q8IXS2 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC65Q8IXS2 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC65Q8IXS2 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC65Q8IXS2 DYNLL1-208ENST00000550178 581 ntBASIC31.32■■■□□ 2.6
CCDC65Q8IXS2 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC65Q8IXS2 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
CCDC65Q8IXS2 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.31■■■□□ 2.6
CCDC65Q8IXS2 AP002365.1-201ENST00000603448 772 ntBASIC31.28■■■□□ 2.6
CCDC65Q8IXS2 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
CCDC65Q8IXS2 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC65Q8IXS2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC65Q8IXS2 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.22■■■□□ 2.59
CCDC65Q8IXS2 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.22■■■□□ 2.59
CCDC65Q8IXS2 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC65Q8IXS2 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC65Q8IXS2 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
CCDC65Q8IXS2 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.2■■■□□ 2.59
CCDC65Q8IXS2 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.2■■■□□ 2.59
CCDC65Q8IXS2 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.2■■■□□ 2.59
CCDC65Q8IXS2 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.2■■■□□ 2.58
CCDC65Q8IXS2 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC65Q8IXS2 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.19■■■□□ 2.58
CCDC65Q8IXS2 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.18■■■□□ 2.58
CCDC65Q8IXS2 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC65Q8IXS2 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC65Q8IXS2 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
CCDC65Q8IXS2 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC65Q8IXS2 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.12■■■□□ 2.57
CCDC65Q8IXS2 AL031258.1-201ENST00000623562 325 ntBASIC31.1■■■□□ 2.57
CCDC65Q8IXS2 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC65Q8IXS2 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC65Q8IXS2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
CCDC65Q8IXS2 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC65Q8IXS2 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC65Q8IXS2 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC65Q8IXS2 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC65Q8IXS2 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC65Q8IXS2 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.02■■■□□ 2.56
CCDC65Q8IXS2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.01■■■□□ 2.55
CCDC65Q8IXS2 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC65Q8IXS2 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31■■■□□ 2.55
CCDC65Q8IXS2 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31■■■□□ 2.55
CCDC65Q8IXS2 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC65Q8IXS2 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC65Q8IXS2 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC65Q8IXS2 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC65Q8IXS2 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.98■■■□□ 2.55
CCDC65Q8IXS2 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
CCDC65Q8IXS2 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CCDC65Q8IXS2 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.94■■■□□ 2.54
CCDC65Q8IXS2 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms