Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CXCL12P48061 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
CXCL12P48061 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.81■■■□□ 2.36
CXCL12P48061 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CXCL12P48061 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
CXCL12P48061 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.78■■■□□ 2.36
CXCL12P48061 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC29.78■■■□□ 2.36
CXCL12P48061 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.77■■■□□ 2.36
CXCL12P48061 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.76■■■□□ 2.35
CXCL12P48061 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.74■■■□□ 2.35
CXCL12P48061 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.74■■■□□ 2.35
CXCL12P48061 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CXCL12P48061 RARRES2P7-201ENST00000567349 469 ntBASIC29.71■■■□□ 2.35
CXCL12P48061 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
CXCL12P48061 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
CXCL12P48061 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.67■■■□□ 2.34
CXCL12P48061 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CXCL12P48061 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.65■■■□□ 2.34
CXCL12P48061 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.61■■■□□ 2.33
CXCL12P48061 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.58■■■□□ 2.33
CXCL12P48061 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CXCL12P48061 AC097358.2-201ENST00000607541 1159 ntBASIC29.51■■■□□ 2.31
CXCL12P48061 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.48■■■□□ 2.31
CXCL12P48061 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
CXCL12P48061 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CXCL12P48061 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.46■■■□□ 2.31
CXCL12P48061 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
CXCL12P48061 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.44■■■□□ 2.3
CXCL12P48061 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
CXCL12P48061 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.4■■■□□ 2.3
CXCL12P48061 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CXCL12P48061 SETD8P1-201ENST00000623146 1180 ntBASIC29.38■■■□□ 2.29
CXCL12P48061 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.37■■■□□ 2.29
CXCL12P48061 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CXCL12P48061 AC136428.2-201ENST00000563187 214 ntBASIC29.34■■■□□ 2.29
CXCL12P48061 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.32■■■□□ 2.28
CXCL12P48061 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.31■■■□□ 2.28
CXCL12P48061 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.29■■■□□ 2.28
CXCL12P48061 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.27■■■□□ 2.28
CXCL12P48061 SUZ12P1-203ENST00000578195 985 ntBASIC29.25■■■□□ 2.27
CXCL12P48061 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CXCL12P48061 RPS2P35-201ENST00000443417 897 ntBASIC29.24■■■□□ 2.27
CXCL12P48061 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.27
CXCL12P48061 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CXCL12P48061 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CXCL12P48061 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.2■■■□□ 2.26
CXCL12P48061 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CXCL12P48061 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.18■■■□□ 2.26
CXCL12P48061 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CXCL12P48061 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
CXCL12P48061 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CXCL12P48061 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
CXCL12P48061 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CXCL12P48061 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.14■■■□□ 2.26
CXCL12P48061 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
CXCL12P48061 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.09■■■□□ 2.25
CXCL12P48061 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.09■■■□□ 2.25
CXCL12P48061 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.08■■■□□ 2.25
CXCL12P48061 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.08■■■□□ 2.25
CXCL12P48061 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.07■■■□□ 2.24
CXCL12P48061 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.07■■■□□ 2.24
CXCL12P48061 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
CXCL12P48061 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.03■■■□□ 2.24
CXCL12P48061 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.95■■■□□ 2.22
CXCL12P48061 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
CXCL12P48061 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.93■■■□□ 2.22
CXCL12P48061 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
CXCL12P48061 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.88■■■□□ 2.21
CXCL12P48061 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CXCL12P48061 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
CXCL12P48061 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CXCL12P48061 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CXCL12P48061 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.84■■■□□ 2.21
CXCL12P48061 CAHM-201ENST00000604200 896 ntBASIC28.83■■■□□ 2.21
CXCL12P48061 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
CXCL12P48061 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CXCL12P48061 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.77■■■□□ 2.2
CXCL12P48061 AL162393.1-201ENST00000437852 946 ntBASIC28.77■■■□□ 2.2
CXCL12P48061 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.77■■■□□ 2.2
CXCL12P48061 AP006261.1-201ENST00000584783 668 ntBASIC28.76■■■□□ 2.19
CXCL12P48061 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.75■■■□□ 2.19
CXCL12P48061 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC28.75■■■□□ 2.19
CXCL12P48061 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CXCL12P48061 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CXCL12P48061 AC145285.7-201ENST00000614819 1539 ntBASIC28.71■■■□□ 2.19
CXCL12P48061 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CXCL12P48061 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CXCL12P48061 NRG1-221ENST00000614767 762 ntTSL 5 BASIC28.69■■■□□ 2.18
CXCL12P48061 AL391121.1-201ENST00000607967 1349 ntBASIC28.69■■■□□ 2.18
CXCL12P48061 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CXCL12P48061 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CXCL12P48061 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CXCL12P48061 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CXCL12P48061 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
CXCL12P48061 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CXCL12P48061 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
CXCL12P48061 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.63■■■□□ 2.17
CXCL12P48061 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CXCL12P48061 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
CXCL12P48061 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms