Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.58
SCN1AP35498 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.12■■■□□ 2.57
SCN1AP35498 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
SCN1AP35498 DYNLL1-208ENST00000550178 581 ntBASIC31.1■■■□□ 2.57
SCN1AP35498 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SCN1AP35498 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.08■■■□□ 2.57
SCN1AP35498 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SCN1AP35498 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SCN1AP35498 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.04■■■□□ 2.56
SCN1AP35498 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SCN1AP35498 AC145285.7-201ENST00000614819 1539 ntBASIC31.03■■■□□ 2.56
SCN1AP35498 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.02■■■□□ 2.56
SCN1AP35498 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
SCN1AP35498 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.01■■■□□ 2.55
SCN1AP35498 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
SCN1AP35498 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SCN1AP35498 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.97■■■□□ 2.55
SCN1AP35498 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SCN1AP35498 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.96■■■□□ 2.55
SCN1AP35498 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
SCN1AP35498 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.95■■■□□ 2.54
SCN1AP35498 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.54
SCN1AP35498 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.95■■■□□ 2.54
SCN1AP35498 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
SCN1AP35498 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
SCN1AP35498 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
SCN1AP35498 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
SCN1AP35498 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SCN1AP35498 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.9■■■□□ 2.54
SCN1AP35498 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SCN1AP35498 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
SCN1AP35498 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.85■■■□□ 2.53
SCN1AP35498 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SCN1AP35498 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.81■■■□□ 2.52
SCN1AP35498 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.8■■■□□ 2.52
SCN1AP35498 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SCN1AP35498 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
SCN1AP35498 AL031258.1-201ENST00000623562 325 ntBASIC30.76■■■□□ 2.51
SCN1AP35498 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SCN1AP35498 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.73■■■□□ 2.51
SCN1AP35498 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
SCN1AP35498 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.69■■■□□ 2.5
SCN1AP35498 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SCN1AP35498 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.65■■■□□ 2.5
SCN1AP35498 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.64■■■□□ 2.5
SCN1AP35498 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.63■■■□□ 2.49
SCN1AP35498 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.63■■■□□ 2.49
SCN1AP35498 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
SCN1AP35498 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SCN1AP35498 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
SCN1AP35498 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
SCN1AP35498 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.52■■■□□ 2.48
SCN1AP35498 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.52■■■□□ 2.48
SCN1AP35498 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SCN1AP35498 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SCN1AP35498 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.45■■■□□ 2.46
SCN1AP35498 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
SCN1AP35498 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
SCN1AP35498 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SCN1AP35498 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.42■■■□□ 2.46
SCN1AP35498 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SCN1AP35498 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
SCN1AP35498 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SCN1AP35498 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
SCN1AP35498 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SCN1AP35498 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.35■■■□□ 2.45
SCN1AP35498 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.35■■■□□ 2.45
SCN1AP35498 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.35■■■□□ 2.45
SCN1AP35498 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.33■■■□□ 2.45
SCN1AP35498 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.33■■■□□ 2.45
SCN1AP35498 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SCN1AP35498 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SCN1AP35498 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SCN1AP35498 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.26■■■□□ 2.44
SCN1AP35498 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
SCN1AP35498 RARRES2P7-201ENST00000567349 469 ntBASIC30.23■■■□□ 2.43
SCN1AP35498 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
SCN1AP35498 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
SCN1AP35498 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.2■■■□□ 2.42
SCN1AP35498 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SCN1AP35498 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
SCN1AP35498 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
SCN1AP35498 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.15■■■□□ 2.42
SCN1AP35498 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.12■■■□□ 2.41
SCN1AP35498 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.12■■■□□ 2.41
SCN1AP35498 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.12■■■□□ 2.41
SCN1AP35498 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SCN1AP35498 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SCN1AP35498 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SCN1AP35498 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
SCN1AP35498 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.06■■■□□ 2.4
SCN1AP35498 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SCN1AP35498 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.05■■■□□ 2.4
SCN1AP35498 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.05■■■□□ 2.4
SCN1AP35498 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.04■■■□□ 2.4
SCN1AP35498 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.02■■■□□ 2.4
SCN1AP35498 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SCN1AP35498 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
SCN1AP35498 AC136428.2-201ENST00000563187 214 ntBASIC29.99■■■□□ 2.39
SCN1AP35498 SETD8P1-201ENST00000623146 1180 ntBASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms