Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC10.11□□□□□ -0.793e-7■■■■■ 28.8
NPM1P06748 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -13e-7■■■■■ 28.8
NPM1P06748 THEM7P-201ENST00000419556 672 ntBASIC11.83□□□□□ -0.521e-323■■■■■ 28.5
NPM1P06748 NR2F2-AS1-202ENST00000557863 515 ntTSL 326.18■■□□□ 1.781e-323■■■■■ 28.5
NPM1P06748 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC44.98■■■■■ 4.791e-7■■■■■ 28.4
NPM1P06748 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.681e-7■■■■■ 28.4
NPM1P06748 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.511e-7■■■■■ 28.4
NPM1P06748 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC20.69■□□□□ 0.91e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC16.88■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC16.86■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC13.26□□□□□ -0.291e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC10.53□□□□□ -0.721e-323■■■■■ 28
NPM1P06748 EIF5B-205ENST00000617677 4698 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.237e-8■■■■□ 26.4
NPM1P06748 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.457e-8■■■■□ 26.4
NPM1P06748 HOXC10-205ENST00000515593 526 ntTSL 414.43□□□□□ -0.15e-7■■■■□ 25.5
NPM1P06748 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.353e-6■■■■□ 23.6
NPM1P06748 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.183e-6■■■■□ 23.6
NPM1P06748 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.623e-6■■■■□ 23.6
NPM1P06748 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC38.09■■■■□ 3.698e-6■■■■□ 23
NPM1P06748 MIR17HG-203ENST00000582141 2845 ntTSL 1 (best)20.96■□□□□ 0.958e-6■■■■□ 23
NPM1P06748 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC9.92□□□□□ -0.828e-6■■■■□ 23
NPM1P06748 MIR19A-201ENST00000384878 82 ntBASIC8.59□□□□□ -1.038e-6■■■■□ 23
NPM1P06748 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC20.75■□□□□ 0.916e-12■■■■□ 22.5
NPM1P06748 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)13.92□□□□□ -0.182e-32■■■■□ 21.7
NPM1P06748 ABCF1-203ENST00000441867 1074 ntTSL 516.76■□□□□ 0.272e-7■■■■□ 21.1
NPM1P06748 ABCF1-201ENST00000326195 3481 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.042e-7■■■■□ 21.1
NPM1P06748 ABCF1-202ENST00000376545 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.22e-7■■■■□ 21.1
NPM1P06748 ABCF1-205ENST00000475993 2860 ntTSL 1 (best)11.97□□□□□ -0.492e-7■■■■□ 21.1
NPM1P06748 NCL-205ENST00000453992 964 ntTSL 431.11■■■□□ 2.573e-10■■■■□ 19.7
NPM1P06748 NCL-203ENST00000417652 568 ntTSL 411.27□□□□□ -0.613e-10■■■■□ 19.7
NPM1P06748 NCL-206ENST00000454824 606 ntTSL 311.27□□□□□ -0.613e-10■■■■□ 19.7
NPM1P06748 NCL-204ENST00000436894 562 ntTSL 410.11□□□□□ -0.793e-10■■■■□ 19.7
NPM1P06748 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.449e-7■■■□□ 19.2
NPM1P06748 MIR126-201ENST00000362291 85 ntBASIC5.26□□□□□ -1.572e-10■■■□□ 19.1
NPM1P06748 MT-TP-201ENST00000387461 68 ntBASIC10.2□□□□□ -0.781e-323■■■□□ 19.1
NPM1P06748 NCL-202ENST00000356936 890 ntTSL 328.81■■■□□ 2.26e-8■■■□□ 18.9
NPM1P06748 NCL-207ENST00000461347 3967 ntTSL 218.47■□□□□ 0.551e-8■■■□□ 18.9
NPM1P06748 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.21e-8■■■□□ 18.9
NPM1P06748 HSP90B1-208ENST00000551983 728 ntTSL 215.6■□□□□ 0.092e-8■■■□□ 18.7
NPM1P06748 NCL-210ENST00000494618 910 ntTSL 215.54■□□□□ 0.083e-8■■■□□ 18.3
NPM1P06748 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.662e-7■■■□□ 17.7
NPM1P06748 CDHR5-207ENST00000531177 2816 ntTSL 219.42■□□□□ 0.72e-7■■■□□ 17.7
NPM1P06748 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.512e-7■■■□□ 17.7
NPM1P06748 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.482e-7■■■□□ 17.7
NPM1P06748 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.72e-16■■■□□ 17.5
NPM1P06748 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC15.44■□□□□ 0.062e-16■■■□□ 17.5
NPM1P06748 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC20.75■□□□□ 0.914e-8■■■□□ 17.3
NPM1P06748 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC14.03□□□□□ -0.165e-7■■■□□ 17.2
NPM1P06748 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC33■■■□□ 2.872e-6■■■□□ 16.7
NPM1P06748 MOK-233ENST00000524214 1539 ntTSL 2 BASIC32.34■■■□□ 2.772e-6■■■□□ 16.7
NPM1P06748 MOK-215ENST00000520266 878 ntTSL 332.22■■■□□ 2.752e-6■■■□□ 16.7
NPM1P06748 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC32.15■■■□□ 2.742e-6■■■□□ 16.7
NPM1P06748 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC31.87■■■□□ 2.692e-6■■■□□ 16.7
NPM1P06748 MOK-208ENST00000519058 917 ntTSL 2 BASIC29.99■■■□□ 2.392e-6■■■□□ 16.7
NPM1P06748 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC28.47■■■□□ 2.152e-6■■■□□ 16.7
NPM1P06748 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.112e-6■■■□□ 16.7
NPM1P06748 MOK-210ENST00000519569 2355 ntTSL 226.27■■□□□ 1.82e-6■■■□□ 16.7
NPM1P06748 MOK-219ENST00000521766 2736 ntTSL 224.28■■□□□ 1.482e-6■■■□□ 16.7
NPM1P06748 MOK-229ENST00000523485 2705 ntTSL 224■■□□□ 1.432e-6■■■□□ 16.7
NPM1P06748 MOK-238ENST00000559838 643 ntTSL 321.56■■□□□ 1.042e-6■■■□□ 16.7
NPM1P06748 MOK-207ENST00000518686 2897 ntTSL 219.85■□□□□ 0.772e-6■■■□□ 16.7
NPM1P06748 MOK-235ENST00000557823 635 ntTSL 319.15■□□□□ 0.662e-6■■■□□ 16.7
NPM1P06748 MOK-240ENST00000562292 735 ntTSL 519■□□□□ 0.632e-6■■■□□ 16.7
NPM1P06748 MOK-236ENST00000559138 2041 ntTSL 1 (best)18.47■□□□□ 0.552e-6■■■□□ 16.7
NPM1P06748 MOK-217ENST00000521388 770 ntTSL 516.42■□□□□ 0.222e-6■■■□□ 16.7
NPM1P06748 MOK-231ENST00000524120 546 ntTSL 315.12■□□□□ 0.012e-6■■■□□ 16.7
NPM1P06748 HSP90B1-206ENST00000550479 698 ntTSL 211.36□□□□□ -0.593e-6■■■□□ 16.5
NPM1P06748 NCL-209ENST00000484328 369 ntTSL 210.16□□□□□ -0.782e-32■■■□□ 16
NPM1P06748 LUC7L3-214ENST00000508482 1597 ntTSL 223.38■■□□□ 1.336e-7■■■□□ 15.8
NPM1P06748 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.36e-7■■■□□ 15.8
NPM1P06748 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC22.44■■□□□ 1.186e-7■■■□□ 15.8
NPM1P06748 LUC7L3-205ENST00000504065 1071 ntTSL 514.05□□□□□ -0.166e-7■■■□□ 15.8
NPM1P06748 LUC7L3-208ENST00000505658 7040 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.286e-7■■■□□ 15.8
NPM1P06748 LUC7L3-219ENST00000511974 507 ntTSL 313.22□□□□□ -0.296e-7■■■□□ 15.8
NPM1P06748 LUC7L3-203ENST00000503728 783 ntTSL 512.64□□□□□ -0.396e-7■■■□□ 15.8
NPM1P06748 LUC7L3-216ENST00000509487 647 ntTSL 39.05□□□□□ -0.966e-7■■■□□ 15.8
NPM1P06748 LUC7L3-222ENST00000513969 419 ntTSL 37.04□□□□□ -1.286e-7■■■□□ 15.8
NPM1P06748 LUC7L3-220ENST00000512549 204 ntTSL 54.22□□□□□ -1.736e-7■■■□□ 15.8
NPM1P06748 TMED9-202ENST00000505521 925 ntTSL 232.37■■■□□ 2.773e-6■■□□□ 14.4
NPM1P06748 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.113e-6■■□□□ 14.4
NPM1P06748 TMED9-204ENST00000507723 1018 ntTSL 225.38■■□□□ 1.653e-6■■□□□ 14.4
NPM1P06748 TMED9-206ENST00000513799 772 ntTSL 219.35■□□□□ 0.693e-6■■□□□ 14.4
NPM1P06748 EIF3A-202ENST00000462527 1192 ntTSL 214.39□□□□□ -0.113e-6■■□□□ 14.4
NPM1P06748 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.251e-12■■□□□ 14.3
NPM1P06748 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.241e-12■■□□□ 14.3
NPM1P06748 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC31.79■■■□□ 2.682e-87■■□□□ 14.2
NPM1P06748 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.62e-87■■□□□ 14.2
NPM1P06748 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC23.1■■□□□ 1.292e-87■■□□□ 14.2
NPM1P06748 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC21.27■■□□□ 12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.982e-87■■□□□ 14.2
NPM1P06748 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)19.59■□□□□ 0.732e-87■■□□□ 14.2
NPM1P06748 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-87■■□□□ 14.2
NPM1P06748 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)14.19□□□□□ -0.142e-87■■□□□ 14.2
NPM1P06748 SNORA53-201ENST00000391141 249 ntBASIC8.45□□□□□ -1.062e-87■■□□□ 14.2
NPM1P06748 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.847e-7■■□□□ 14.1
NPM1P06748 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.777e-7■■□□□ 14.1
NPM1P06748 HMGB2-205ENST00000511316 1841 ntTSL 219.86■□□□□ 0.777e-7■■□□□ 14.1
NPM1P06748 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.217e-7■■□□□ 14.1
NPM1P06748 STXBP3-202ENST00000469338 294 ntTSL 230.07■■■□□ 2.43e-7■■□□□ 13.8
Retrieved 100 of 408 protein–RNA pairs in 726.7 ms