Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC10.11□□□□□ -0.793e-7■■■■■ 28.8
NPM1P06748 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -13e-7■■■■■ 28.8
NPM1P06748 THEM7P-201ENST00000419556 672 ntBASIC11.83□□□□□ -0.521e-323■■■■■ 28.5
NPM1P06748 NR2F2-AS1-202ENST00000557863 515 ntTSL 326.18■■□□□ 1.781e-323■■■■■ 28.5
NPM1P06748 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC44.98■■■■■ 4.791e-7■■■■■ 28.4
NPM1P06748 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.681e-7■■■■■ 28.4
NPM1P06748 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.511e-7■■■■■ 28.4
NPM1P06748 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC20.69■□□□□ 0.91e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC16.88■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC16.86■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC13.26□□□□□ -0.291e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC10.53□□□□□ -0.721e-323■■■■■ 28
NPM1P06748 EIF5B-205ENST00000617677 4698 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.237e-8■■■■□ 26.4
NPM1P06748 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.457e-8■■■■□ 26.4
NPM1P06748 HOXC10-205ENST00000515593 526 ntTSL 414.43□□□□□ -0.15e-7■■■■□ 25.5
NPM1P06748 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.353e-6■■■■□ 23.6
NPM1P06748 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.183e-6■■■■□ 23.6
NPM1P06748 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.623e-6■■■■□ 23.6
NPM1P06748 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC38.09■■■■□ 3.698e-6■■■■□ 23
NPM1P06748 MIR17HG-203ENST00000582141 2845 ntTSL 1 (best)20.96■□□□□ 0.958e-6■■■■□ 23
NPM1P06748 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC9.92□□□□□ -0.828e-6■■■■□ 23
NPM1P06748 MIR19A-201ENST00000384878 82 ntBASIC8.59□□□□□ -1.038e-6■■■■□ 23
NPM1P06748 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC20.75■□□□□ 0.916e-12■■■■□ 22.5
NPM1P06748 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)13.92□□□□□ -0.182e-32■■■■□ 21.7
NPM1P06748 ABCF1-203ENST00000441867 1074 ntTSL 516.76■□□□□ 0.272e-7■■■■□ 21.1
NPM1P06748 ABCF1-201ENST00000326195 3481 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.042e-7■■■■□ 21.1
NPM1P06748 ABCF1-202ENST00000376545 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.22e-7■■■■□ 21.1
NPM1P06748 ABCF1-205ENST00000475993 2860 ntTSL 1 (best)11.97□□□□□ -0.492e-7■■■■□ 21.1
NPM1P06748 NCL-205ENST00000453992 964 ntTSL 431.11■■■□□ 2.573e-10■■■■□ 19.7
NPM1P06748 NCL-203ENST00000417652 568 ntTSL 411.27□□□□□ -0.613e-10■■■■□ 19.7
NPM1P06748 NCL-206ENST00000454824 606 ntTSL 311.27□□□□□ -0.613e-10■■■■□ 19.7
NPM1P06748 NCL-204ENST00000436894 562 ntTSL 410.11□□□□□ -0.793e-10■■■■□ 19.7
NPM1P06748 ABCE1-201ENST00000296577 3921 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.449e-7■■■□□ 19.2
NPM1P06748 MIR126-201ENST00000362291 85 ntBASIC5.26□□□□□ -1.572e-10■■■□□ 19.1
NPM1P06748 MT-TP-201ENST00000387461 68 ntBASIC10.2□□□□□ -0.781e-323■■■□□ 19.1
NPM1P06748 NCL-202ENST00000356936 890 ntTSL 328.81■■■□□ 2.26e-8■■■□□ 18.9
NPM1P06748 NCL-207ENST00000461347 3967 ntTSL 218.47■□□□□ 0.551e-8■■■□□ 18.9
NPM1P06748 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.21e-8■■■□□ 18.9
NPM1P06748 HSP90B1-208ENST00000551983 728 ntTSL 215.6■□□□□ 0.092e-8■■■□□ 18.7
NPM1P06748 NCL-210ENST00000494618 910 ntTSL 215.54■□□□□ 0.083e-8■■■□□ 18.3
NPM1P06748 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.662e-7■■■□□ 17.7
NPM1P06748 CDHR5-207ENST00000531177 2816 ntTSL 219.42■□□□□ 0.72e-7■■■□□ 17.7
NPM1P06748 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.512e-7■■■□□ 17.7
NPM1P06748 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.482e-7■■■□□ 17.7
NPM1P06748 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.72e-16■■■□□ 17.5
NPM1P06748 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC15.44■□□□□ 0.062e-16■■■□□ 17.5
NPM1P06748 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC20.75■□□□□ 0.914e-8■■■□□ 17.3
NPM1P06748 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC14.03□□□□□ -0.165e-7■■■□□ 17.2
NPM1P06748 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC33■■■□□ 2.872e-6■■■□□ 16.7
NPM1P06748 MOK-233ENST00000524214 1539 ntTSL 2 BASIC32.34■■■□□ 2.772e-6■■■□□ 16.7
NPM1P06748 MOK-215ENST00000520266 878 ntTSL 332.22■■■□□ 2.752e-6■■■□□ 16.7
NPM1P06748 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC32.15■■■□□ 2.742e-6■■■□□ 16.7
NPM1P06748 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC31.87■■■□□ 2.692e-6■■■□□ 16.7
NPM1P06748 MOK-208ENST00000519058 917 ntTSL 2 BASIC29.99■■■□□ 2.392e-6■■■□□ 16.7
NPM1P06748 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC28.47■■■□□ 2.152e-6■■■□□ 16.7
NPM1P06748 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.112e-6■■■□□ 16.7
NPM1P06748 MOK-210ENST00000519569 2355 ntTSL 226.27■■□□□ 1.82e-6■■■□□ 16.7
NPM1P06748 MOK-219ENST00000521766 2736 ntTSL 224.28■■□□□ 1.482e-6■■■□□ 16.7
NPM1P06748 MOK-229ENST00000523485 2705 ntTSL 224■■□□□ 1.432e-6■■■□□ 16.7
NPM1P06748 MOK-238ENST00000559838 643 ntTSL 321.56■■□□□ 1.042e-6■■■□□ 16.7
NPM1P06748 MOK-207ENST00000518686 2897 ntTSL 219.85■□□□□ 0.772e-6■■■□□ 16.7
NPM1P06748 MOK-235ENST00000557823 635 ntTSL 319.15■□□□□ 0.662e-6■■■□□ 16.7
NPM1P06748 MOK-240ENST00000562292 735 ntTSL 519■□□□□ 0.632e-6■■■□□ 16.7
NPM1P06748 MOK-236ENST00000559138 2041 ntTSL 1 (best)18.47■□□□□ 0.552e-6■■■□□ 16.7
NPM1P06748 MOK-217ENST00000521388 770 ntTSL 516.42■□□□□ 0.222e-6■■■□□ 16.7
NPM1P06748 MOK-231ENST00000524120 546 ntTSL 315.12■□□□□ 0.012e-6■■■□□ 16.7
NPM1P06748 HSP90B1-206ENST00000550479 698 ntTSL 211.36□□□□□ -0.593e-6■■■□□ 16.5
NPM1P06748 NCL-209ENST00000484328 369 ntTSL 210.16□□□□□ -0.782e-32■■■□□ 16
NPM1P06748 LUC7L3-214ENST00000508482 1597 ntTSL 223.38■■□□□ 1.336e-7■■■□□ 15.8
NPM1P06748 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.36e-7■■■□□ 15.8
NPM1P06748 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC22.44■■□□□ 1.186e-7■■■□□ 15.8
NPM1P06748 LUC7L3-205ENST00000504065 1071 ntTSL 514.05□□□□□ -0.166e-7■■■□□ 15.8
NPM1P06748 LUC7L3-208ENST00000505658 7040 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.286e-7■■■□□ 15.8
NPM1P06748 LUC7L3-219ENST00000511974 507 ntTSL 313.22□□□□□ -0.296e-7■■■□□ 15.8
NPM1P06748 LUC7L3-203ENST00000503728 783 ntTSL 512.64□□□□□ -0.396e-7■■■□□ 15.8
NPM1P06748 LUC7L3-216ENST00000509487 647 ntTSL 39.05□□□□□ -0.966e-7■■■□□ 15.8
NPM1P06748 LUC7L3-222ENST00000513969 419 ntTSL 37.04□□□□□ -1.286e-7■■■□□ 15.8
NPM1P06748 LUC7L3-220ENST00000512549 204 ntTSL 54.22□□□□□ -1.736e-7■■■□□ 15.8
NPM1P06748 TMED9-202ENST00000505521 925 ntTSL 232.37■■■□□ 2.773e-6■■□□□ 14.4
NPM1P06748 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.113e-6■■□□□ 14.4
NPM1P06748 TMED9-204ENST00000507723 1018 ntTSL 225.38■■□□□ 1.653e-6■■□□□ 14.4
NPM1P06748 TMED9-206ENST00000513799 772 ntTSL 219.35■□□□□ 0.693e-6■■□□□ 14.4
NPM1P06748 EIF3A-202ENST00000462527 1192 ntTSL 214.39□□□□□ -0.113e-6■■□□□ 14.4
NPM1P06748 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.251e-12■■□□□ 14.3
NPM1P06748 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.241e-12■■□□□ 14.3
NPM1P06748 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC31.79■■■□□ 2.682e-87■■□□□ 14.2
NPM1P06748 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.62e-87■■□□□ 14.2
NPM1P06748 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC23.1■■□□□ 1.292e-87■■□□□ 14.2
NPM1P06748 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC21.27■■□□□ 12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.982e-87■■□□□ 14.2
NPM1P06748 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)19.59■□□□□ 0.732e-87■■□□□ 14.2
NPM1P06748 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-87■■□□□ 14.2
NPM1P06748 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)14.19□□□□□ -0.142e-87■■□□□ 14.2
NPM1P06748 SNORA53-201ENST00000391141 249 ntBASIC8.45□□□□□ -1.062e-87■■□□□ 14.2
NPM1P06748 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.847e-7■■□□□ 14.1
NPM1P06748 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.777e-7■■□□□ 14.1
NPM1P06748 HMGB2-205ENST00000511316 1841 ntTSL 219.86■□□□□ 0.777e-7■■□□□ 14.1
NPM1P06748 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.217e-7■■□□□ 14.1
NPM1P06748 STXBP3-202ENST00000469338 294 ntTSL 230.07■■■□□ 2.43e-7■■□□□ 13.8
Retrieved 100 of 408 protein–RNA pairs in 17.2 ms