Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
ALDH1A1P00352 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
ALDH1A1P00352 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
ALDH1A1P00352 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC34.55■■■■□ 3.12
ALDH1A1P00352 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
ALDH1A1P00352 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC34.52■■■■□ 3.12
ALDH1A1P00352 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC34.51■■■■□ 3.12
ALDH1A1P00352 RARRES2P7-201ENST00000567349 469 ntBASIC34.5■■■■□ 3.11
ALDH1A1P00352 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC34.48■■■■□ 3.11
ALDH1A1P00352 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC34.44■■■■□ 3.1
ALDH1A1P00352 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC34.38■■■■□ 3.09
ALDH1A1P00352 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC34.34■■■■□ 3.09
ALDH1A1P00352 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC34.3■■■■□ 3.08
ALDH1A1P00352 AC097358.2-201ENST00000607541 1159 ntBASIC34.28■■■■□ 3.08
ALDH1A1P00352 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
ALDH1A1P00352 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC34.21■■■■□ 3.07
ALDH1A1P00352 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC34.2■■■■□ 3.07
ALDH1A1P00352 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.16■■■■□ 3.06
ALDH1A1P00352 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC34.16■■■■□ 3.06
ALDH1A1P00352 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
ALDH1A1P00352 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC34.13■■■■□ 3.05
ALDH1A1P00352 RPS2P35-201ENST00000443417 897 ntBASIC34.11■■■■□ 3.05
ALDH1A1P00352 AC136428.2-201ENST00000563187 214 ntBASIC34.1■■■■□ 3.05
ALDH1A1P00352 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC34.09■■■■□ 3.05
ALDH1A1P00352 SETD8P1-201ENST00000623146 1180 ntBASIC34.09■■■■□ 3.05
ALDH1A1P00352 EBPL-203ENST00000378270 579 ntTSL 2 BASIC34.04■■■■□ 3.04
ALDH1A1P00352 SUZ12P1-203ENST00000578195 985 ntBASIC34.04■■■■□ 3.04
ALDH1A1P00352 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
ALDH1A1P00352 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC34.03■■■■□ 3.04
ALDH1A1P00352 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
ALDH1A1P00352 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
ALDH1A1P00352 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
ALDH1A1P00352 KLF16-203ENST00000592313 508 ntTSL 3 BASIC33.93■■■■□ 3.02
ALDH1A1P00352 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.89■■■■□ 3.02
ALDH1A1P00352 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC33.89■■■■□ 3.02
ALDH1A1P00352 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
ALDH1A1P00352 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC33.89■■■■□ 3.02
ALDH1A1P00352 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.89■■■■□ 3.02
ALDH1A1P00352 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC33.86■■■■□ 3.01
ALDH1A1P00352 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.84■■■■□ 3.01
ALDH1A1P00352 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
ALDH1A1P00352 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC33.82■■■■□ 3
ALDH1A1P00352 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
ALDH1A1P00352 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC33.8■■■■□ 3
ALDH1A1P00352 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC33.8■■■■□ 3
ALDH1A1P00352 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC33.79■■■■□ 3
ALDH1A1P00352 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC33.78■■■■□ 3
ALDH1A1P00352 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC33.77■■■■□ 3
ALDH1A1P00352 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC33.73■■■□□ 2.99
ALDH1A1P00352 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC33.73■■■□□ 2.99
ALDH1A1P00352 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC33.71■■■□□ 2.99
ALDH1A1P00352 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC33.69■■■□□ 2.98
ALDH1A1P00352 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
ALDH1A1P00352 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC33.66■■■□□ 2.98
ALDH1A1P00352 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
ALDH1A1P00352 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
ALDH1A1P00352 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
ALDH1A1P00352 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC33.61■■■□□ 2.97
ALDH1A1P00352 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC33.61■■■□□ 2.97
ALDH1A1P00352 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC33.59■■■□□ 2.97
ALDH1A1P00352 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC33.53■■■□□ 2.96
ALDH1A1P00352 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC33.52■■■□□ 2.96
ALDH1A1P00352 AP006261.1-201ENST00000584783 668 ntBASIC33.51■■■□□ 2.95
ALDH1A1P00352 AL162393.1-201ENST00000437852 946 ntBASIC33.49■■■□□ 2.95
ALDH1A1P00352 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
ALDH1A1P00352 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
ALDH1A1P00352 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC33.41■■■□□ 2.94
ALDH1A1P00352 CAHM-201ENST00000604200 896 ntBASIC33.41■■■□□ 2.94
ALDH1A1P00352 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC33.41■■■□□ 2.94
ALDH1A1P00352 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
ALDH1A1P00352 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC33.4■■■□□ 2.94
ALDH1A1P00352 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC33.4■■■□□ 2.94
ALDH1A1P00352 NRG1-221ENST00000614767 762 ntTSL 5 BASIC33.38■■■□□ 2.93
ALDH1A1P00352 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
ALDH1A1P00352 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
ALDH1A1P00352 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
ALDH1A1P00352 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
ALDH1A1P00352 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC33.26■■■□□ 2.91
ALDH1A1P00352 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
ALDH1A1P00352 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
ALDH1A1P00352 AL391121.1-201ENST00000607967 1349 ntBASIC33.24■■■□□ 2.91
ALDH1A1P00352 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
ALDH1A1P00352 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33.22■■■□□ 2.91
ALDH1A1P00352 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
ALDH1A1P00352 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC33.21■■■□□ 2.91
ALDH1A1P00352 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
ALDH1A1P00352 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
ALDH1A1P00352 MVK-208ENST00000539696 608 ntTSL 5 BASIC33.2■■■□□ 2.91
ALDH1A1P00352 MIR7108-201ENST00000614319 87 ntBASIC33.19■■■□□ 2.9
ALDH1A1P00352 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
ALDH1A1P00352 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC33.18■■■□□ 2.9
ALDH1A1P00352 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC33.18■■■□□ 2.9
ALDH1A1P00352 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
ALDH1A1P00352 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
ALDH1A1P00352 HNRNPLP2-201ENST00000568980 1570 ntBASIC33.17■■■□□ 2.9
ALDH1A1P00352 ABHD17AP4-201ENST00000411545 909 ntBASIC33.16■■■□□ 2.9
ALDH1A1P00352 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
ALDH1A1P00352 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC33.12■■■□□ 2.89
ALDH1A1P00352 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC33.11■■■□□ 2.89
ALDH1A1P00352 ILK-212ENST00000532063 1617 ntTSL 2 BASIC33.1■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms