Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.1■■■□□ 2.73
NPHP3-ACAD11A0A0J9YXS1 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
NPHP3-ACAD11A0A0J9YXS1 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
NPHP3-ACAD11A0A0J9YXS1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
NPHP3-ACAD11A0A0J9YXS1 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP3-ACAD11A0A0J9YXS1 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP3-ACAD11A0A0J9YXS1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32■■■□□ 2.71
NPHP3-ACAD11A0A0J9YXS1 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32■■■□□ 2.71
NPHP3-ACAD11A0A0J9YXS1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP3-ACAD11A0A0J9YXS1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP3-ACAD11A0A0J9YXS1 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.92■■■□□ 2.7
NPHP3-ACAD11A0A0J9YXS1 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.91■■■□□ 2.7
NPHP3-ACAD11A0A0J9YXS1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.91■■■□□ 2.7
NPHP3-ACAD11A0A0J9YXS1 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3-ACAD11A0A0J9YXS1 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.88■■■□□ 2.69
NPHP3-ACAD11A0A0J9YXS1 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
NPHP3-ACAD11A0A0J9YXS1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
NPHP3-ACAD11A0A0J9YXS1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NPHP3-ACAD11A0A0J9YXS1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NPHP3-ACAD11A0A0J9YXS1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.79■■■□□ 2.68
NPHP3-ACAD11A0A0J9YXS1 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NPHP3-ACAD11A0A0J9YXS1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.78■■■□□ 2.68
NPHP3-ACAD11A0A0J9YXS1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
NPHP3-ACAD11A0A0J9YXS1 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.74■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 DYNLL1-208ENST00000550178 581 ntBASIC31.71■■■□□ 2.67
NPHP3-ACAD11A0A0J9YXS1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.69■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 AP002365.1-201ENST00000603448 772 ntBASIC31.69■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.68■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.68■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.67■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.66■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.64■■■□□ 2.66
NPHP3-ACAD11A0A0J9YXS1 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.61■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.57■■■□□ 2.65
NPHP3-ACAD11A0A0J9YXS1 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.56■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP3-ACAD11A0A0J9YXS1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 AL031258.1-201ENST00000623562 325 ntBASIC31.49■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.46■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NPHP3-ACAD11A0A0J9YXS1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP3-ACAD11A0A0J9YXS1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
NPHP3-ACAD11A0A0J9YXS1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.4■■■□□ 2.62
NPHP3-ACAD11A0A0J9YXS1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP3-ACAD11A0A0J9YXS1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.39■■■□□ 2.62
NPHP3-ACAD11A0A0J9YXS1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP3-ACAD11A0A0J9YXS1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP3-ACAD11A0A0J9YXS1 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.35■■■□□ 2.61
NPHP3-ACAD11A0A0J9YXS1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.34■■■□□ 2.61
NPHP3-ACAD11A0A0J9YXS1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.33■■■□□ 2.61
NPHP3-ACAD11A0A0J9YXS1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.32■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP3-ACAD11A0A0J9YXS1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP3-ACAD11A0A0J9YXS1 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.23■■■□□ 2.59
NPHP3-ACAD11A0A0J9YXS1 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP3-ACAD11A0A0J9YXS1 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.22■■■□□ 2.59
NPHP3-ACAD11A0A0J9YXS1 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.2■■■□□ 2.59
NPHP3-ACAD11A0A0J9YXS1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP3-ACAD11A0A0J9YXS1 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
NPHP3-ACAD11A0A0J9YXS1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.15■■■□□ 2.58
NPHP3-ACAD11A0A0J9YXS1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.14■■■□□ 2.58
NPHP3-ACAD11A0A0J9YXS1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NPHP3-ACAD11A0A0J9YXS1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.11■■■□□ 2.57
NPHP3-ACAD11A0A0J9YXS1 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.08■■■□□ 2.57
NPHP3-ACAD11A0A0J9YXS1 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.08■■■□□ 2.57
NPHP3-ACAD11A0A0J9YXS1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.08■■■□□ 2.57
NPHP3-ACAD11A0A0J9YXS1 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
NPHP3-ACAD11A0A0J9YXS1 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
NPHP3-ACAD11A0A0J9YXS1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.05■■■□□ 2.56
NPHP3-ACAD11A0A0J9YXS1 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP3-ACAD11A0A0J9YXS1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NPHP3-ACAD11A0A0J9YXS1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NPHP3-ACAD11A0A0J9YXS1 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms