Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC006277.1-201ENST00000624348 1610 ntBASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 IGHV3-52-201ENST00000519770 353 ntBASIC9.92□□□□□ -0.82
LINC00643Q86TS7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 AC097359.2-201ENST00000604992 2389 ntBASIC9.92□□□□□ -0.82
LINC00643Q86TS7 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC9.92□□□□□ -0.82
LINC00643Q86TS7 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AOC4P-203ENST00000566825 2289 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 OS9-218ENST00000551035 2246 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 FBN3-201ENST00000270509 9232 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 USP35-204ENST00000530267 2419 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AC004241.5-201ENST00000623870 2448 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AC020658.7-201ENST00000624274 2442 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 KRT19P1-201ENST00000405746 1186 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC9.91□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms