Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 AC004987.2-201ENST00000395959 1148 ntBASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 AC140878.1-201ENST00000565277 250 ntBASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 MIR3197-201ENST00000582241 73 ntBASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 AL589739.1-201ENST00000607720 493 ntBASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 SPDYE12P-201ENST00000618416 771 ntBASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
LYSMD3Q7Z3D4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
LYSMD3Q7Z3D4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 TREML5P-201ENST00000421694 576 ntBASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 AC069120.2-201ENST00000524091 540 ntBASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 AC244517.3-201ENST00000616254 1235 ntBASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LYSMD3Q7Z3D4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 CETN4P-206ENST00000642099 2168 ntBASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 MIR770-201ENST00000390219 98 ntBASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 MIR943-201ENST00000401286 94 ntBASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 AL079307.3-201ENST00000556114 283 ntBASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 FO538757.1-201ENST00000623083 1397 ntBASIC16.07■□□□□ 0.16
LYSMD3Q7Z3D4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms