Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH6P52701 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
MSH6P52701 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 SNX21-203ENST00000372541 771 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 NDUFAB1P1-201ENST00000404262 460 ntBASIC21.79■■□□□ 1.08
MSH6P52701 TISP43-201ENST00000409793 538 ntTSL 4 BASIC21.79■■□□□ 1.08
MSH6P52701 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 AC104784.1-201ENST00000473096 294 ntBASIC21.79■■□□□ 1.08
MSH6P52701 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 AL133499.1-201ENST00000596207 608 ntBASIC21.79■■□□□ 1.08
MSH6P52701 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH6P52701 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH6P52701 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH6P52701 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
MSH6P52701 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
MSH6P52701 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 ACTBP8-201ENST00000403258 1108 ntBASIC21.78■■□□□ 1.08
MSH6P52701 SUN1-204ENST00000403868 978 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH6P52701 Z97180.1-201ENST00000445173 988 ntBASIC21.78■■□□□ 1.08
MSH6P52701 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC21.78■■□□□ 1.08
MSH6P52701 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC21.78■■□□□ 1.08
MSH6P52701 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
MSH6P52701 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH6P52701 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH6P52701 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH6P52701 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
MSH6P52701 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH6P52701 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
MSH6P52701 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
MSH6P52701 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 MSRA-203ENST00000441698 788 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC21.77■■□□□ 1.08
MSH6P52701 NUP210P1-202ENST00000504322 710 ntBASIC21.77■■□□□ 1.08
MSH6P52701 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC21.77■■□□□ 1.08
MSH6P52701 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 RN7SL48P-201ENST00000579283 293 ntBASIC21.77■■□□□ 1.08
MSH6P52701 AP000346.4-201ENST00000614827 381 ntBASIC21.77■■□□□ 1.08
MSH6P52701 AC244157.2-201ENST00000616239 1006 ntBASIC21.77■■□□□ 1.08
MSH6P52701 HLA-C-210ENST00000640219 976 ntBASIC21.77■■□□□ 1.08
MSH6P52701 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH6P52701 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH6P52701 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
MSH6P52701 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
MSH6P52701 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
MSH6P52701 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
MSH6P52701 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
MSH6P52701 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.77■■□□□ 1.07
MSH6P52701 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH6P52701 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH6P52701 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH6P52701 AC024681.1-201ENST00000521917 487 ntBASIC21.76■■□□□ 1.07
MSH6P52701 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MSH6P52701 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
MSH6P52701 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH6P52701 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC21.76■■□□□ 1.07
MSH6P52701 AL450472.2-201ENST00000603663 1156 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms