Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AL162274.1-201ENST00000617191 1098 ntBASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TM9SF3Q9HD45 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.02■□□□□ 0.15
TM9SF3Q9HD45 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HLA-V-201ENST00000429037 534 ntBASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 MYCLP2-201ENST00000449268 967 ntBASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.01■□□□□ 0.15
TM9SF3Q9HD45 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 AC006538.1-201ENST00000567905 1585 ntBASIC16■□□□□ 0.15
TM9SF3Q9HD45 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16■□□□□ 0.15
TM9SF3Q9HD45 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16■□□□□ 0.15
TM9SF3Q9HD45 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 164.5 ms