Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AP003680.1-201ENST00000598970 3660 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 TSPY19P-201ENST00000418461 509 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 TSPY18P-201ENST00000441642 509 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AC136632.2-201ENST00000512891 861 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AC107918.4-202ENST00000641623 219 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AL731571.1-201ENST00000617058 5428 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 PTENP1-202ENST00000532280 3996 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CHMP1AQ9HD42 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CHMP1AQ9HD42 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms