Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.74■□□□□ 0.43
HPS3Q969F9 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HPS3Q969F9 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.73■□□□□ 0.43
HPS3Q969F9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
HPS3Q969F9 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.73■□□□□ 0.43
HPS3Q969F9 AL139010.1-201ENST00000454878 894 ntBASIC17.73■□□□□ 0.43
HPS3Q969F9 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.73■□□□□ 0.43
HPS3Q969F9 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.73■□□□□ 0.43
HPS3Q969F9 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HPS3Q969F9 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HPS3Q969F9 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HPS3Q969F9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.73■□□□□ 0.43
HPS3Q969F9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.72■□□□□ 0.43
HPS3Q969F9 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.72■□□□□ 0.43
HPS3Q969F9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HPS3Q969F9 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 AC004987.2-201ENST00000395959 1148 ntBASIC17.72■□□□□ 0.43
HPS3Q969F9 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.72■□□□□ 0.43
HPS3Q969F9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 MIR4313-201ENST00000580760 101 ntBASIC17.72■□□□□ 0.43
HPS3Q969F9 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.72■□□□□ 0.43
HPS3Q969F9 AL133215.2-201ENST00000609242 977 ntBASIC17.72■□□□□ 0.43
HPS3Q969F9 MIR6080-201ENST00000617359 66 ntBASIC17.72■□□□□ 0.43
HPS3Q969F9 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.72■□□□□ 0.43
HPS3Q969F9 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HPS3Q969F9 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HPS3Q969F9 PPT1-215ENST00000641471 2368 ntBASIC17.72■□□□□ 0.43
HPS3Q969F9 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.72■□□□□ 0.43
HPS3Q969F9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.71■□□□□ 0.43
HPS3Q969F9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HPS3Q969F9 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.71■□□□□ 0.43
HPS3Q969F9 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.71■□□□□ 0.43
HPS3Q969F9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.71■□□□□ 0.43
HPS3Q969F9 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.71■□□□□ 0.43
HPS3Q969F9 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 LINC00628-201ENST00000628516 1289 ntBASIC17.71■□□□□ 0.43
HPS3Q969F9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
HPS3Q969F9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HPS3Q969F9 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
HPS3Q969F9 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms