Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC65Q8IXS2 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 SPDYE7P-202ENST00000420373 878 ntBASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 AC007967.4-201ENST00000614700 386 ntBASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 MIR6080-201ENST00000617359 66 ntBASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 AL691403.2-201ENST00000618460 490 ntBASIC17.77■□□□□ 0.44
CCDC65Q8IXS2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC65Q8IXS2 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 BANF1P1-201ENST00000553684 263 ntBASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
CCDC65Q8IXS2 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 CICP6-201ENST00000457191 2729 ntBASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC65Q8IXS2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms