Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 OR6D1P-203ENST00000641209 4860 ntBASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 CR383656.12-201ENST00000549567 513 ntBASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 RRP7BP-205ENST00000566851 833 ntBASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 CTBP2P3-201ENST00000585629 1255 ntBASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 CU639417.3-201ENST00000624240 1404 ntBASIC17.71■□□□□ 0.43
CCDC60Q8IWA6 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC60Q8IWA6 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC60Q8IWA6 CLK3P2-201ENST00000427566 1453 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 AC124067.4-201ENST00000519691 2379 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 AC098614.1-201ENST00000368528 745 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 SLED1-202ENST00000512051 380 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 CYP2T1P-202ENST00000641596 2535 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 CDC14C-201ENST00000428251 1719 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 LINC02199-201ENST00000506655 2702 ntBASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC60Q8IWA6 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms