Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.56■□□□□ 0.24
NEK3P51956 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
NEK3P51956 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NEK3P51956 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.56■□□□□ 0.24
NEK3P51956 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 AC013268.4-201ENST00000637413 2228 ntBASIC16.55■□□□□ 0.24
NEK3P51956 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.55■□□□□ 0.24
NEK3P51956 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
NEK3P51956 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
NEK3P51956 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.55■□□□□ 0.24
NEK3P51956 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.55■□□□□ 0.24
NEK3P51956 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.55■□□□□ 0.24
NEK3P51956 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.55■□□□□ 0.24
NEK3P51956 RARRES2P9-201ENST00000565168 469 ntBASIC16.55■□□□□ 0.24
NEK3P51956 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
NEK3P51956 AC011467.4-201ENST00000594891 528 ntBASIC16.55■□□□□ 0.24
NEK3P51956 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 LINC01144-201ENST00000626198 1710 ntBASIC16.55■□□□□ 0.24
NEK3P51956 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.55■□□□□ 0.24
NEK3P51956 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.55■□□□□ 0.24
NEK3P51956 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
NEK3P51956 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NEK3P51956 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 AC069224.1-201ENST00000566372 1715 ntBASIC16.54■□□□□ 0.24
NEK3P51956 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 HLA-H-201ENST00000383620 1096 ntBASIC16.54■□□□□ 0.24
NEK3P51956 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 AC107890.1-201ENST00000422478 521 ntBASIC16.54■□□□□ 0.24
NEK3P51956 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.54■□□□□ 0.24
NEK3P51956 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NEK3P51956 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
NEK3P51956 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.54■□□□□ 0.24
NEK3P51956 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms