Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MRE11P49959 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 AC091951.1-201ENST00000512854 2465 ntBASIC18.77■□□□□ 0.6
MRE11P49959 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 GK-202ENST00000378941 458 ntTSL 3 BASIC18.77■□□□□ 0.6
MRE11P49959 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.77■□□□□ 0.6
MRE11P49959 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.77■□□□□ 0.6
MRE11P49959 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
MRE11P49959 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MRE11P49959 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MRE11P49959 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
MRE11P49959 PCGF3-213ENST00000620529 1899 ntBASIC18.77■□□□□ 0.6
MRE11P49959 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MRE11P49959 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.77■□□□□ 0.59
MRE11P49959 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.77■□□□□ 0.59
MRE11P49959 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MRE11P49959 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MRE11P49959 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MRE11P49959 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
MRE11P49959 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC18.77■□□□□ 0.59
MRE11P49959 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.76■□□□□ 0.59
MRE11P49959 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 AC041040.2-201ENST00000622926 2899 ntBASIC18.76■□□□□ 0.59
MRE11P49959 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 AP002414.1-201ENST00000391405 1147 ntBASIC18.76■□□□□ 0.59
MRE11P49959 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.76■□□□□ 0.59
MRE11P49959 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 PGM5P2-202ENST00000637225 1043 ntBASIC18.76■□□□□ 0.59
MRE11P49959 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.76■□□□□ 0.59
MRE11P49959 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
MRE11P49959 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MRE11P49959 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
MRE11P49959 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MRE11P49959 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.75■□□□□ 0.59
MRE11P49959 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.75■□□□□ 0.59
MRE11P49959 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MRE11P49959 Z83836.1-201ENST00000624605 1642 ntBASIC18.75■□□□□ 0.59
MRE11P49959 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.75■□□□□ 0.59
MRE11P49959 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.75■□□□□ 0.59
MRE11P49959 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
MRE11P49959 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MRE11P49959 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms