Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CNN2P2-201ENST00000443536 909 ntBASIC15.14■□□□□ 0.01
SOX3P41225 CNN2P3-201ENST00000450201 906 ntBASIC15.14■□□□□ 0.01
SOX3P41225 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
SOX3P41225 AL512356.2-201ENST00000546955 174 ntBASIC15.14■□□□□ 0.01
SOX3P41225 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.14■□□□□ 0.01
SOX3P41225 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 AC093512.1-201ENST00000617969 520 ntBASIC15.14■□□□□ 0.01
SOX3P41225 AL136317.3-201ENST00000618497 906 ntBASIC15.14■□□□□ 0.01
SOX3P41225 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX3P41225 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.14■□□□□ 0.01
SOX3P41225 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 AL603832.2-201ENST00000566195 2125 ntBASIC15.14■□□□□ 0.01
SOX3P41225 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.14■□□□□ 0.01
SOX3P41225 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 PCGF3-213ENST00000620529 1899 ntBASIC15.14■□□□□ 0.01
SOX3P41225 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SOX3P41225 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.13■□□□□ 0.01
SOX3P41225 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SOX3P41225 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX3P41225 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.13■□□□□ 0.01
SOX3P41225 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX3P41225 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.13■□□□□ 0.01
SOX3P41225 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.13■□□□□ 0.01
SOX3P41225 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SOX3P41225 AC069262.1-201ENST00000539058 672 ntBASIC15.13■□□□□ 0.01
SOX3P41225 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SOX3P41225 MIR6080-201ENST00000617359 66 ntBASIC15.13■□□□□ 0.01
SOX3P41225 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SOX3P41225 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SOX3P41225 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.13■□□□□ 0.01
SOX3P41225 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.13■□□□□ 0.01
SOX3P41225 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
SOX3P41225 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SOX3P41225 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SOX3P41225 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.13■□□□□ 0.01
SOX3P41225 GGT3P-204ENST00000453783 1664 ntBASIC15.12■□□□□ 0.01
SOX3P41225 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 AC008677.1-201ENST00000519230 1561 ntBASIC15.12■□□□□ 0.01
SOX3P41225 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SOX3P41225 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.12■□□□□ 0.01
SOX3P41225 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.12■□□□□ 0.01
SOX3P41225 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.12■□□□□ 0.01
SOX3P41225 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.12■□□□□ 0.01
SOX3P41225 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms