Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A5P29400 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COL4A5P29400 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL4A5P29400 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL4A5P29400 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 AC106886.4-201ENST00000623557 2502 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COL4A5P29400 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A5P29400 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A5P29400 AC008132.1-202ENST00000342005 1389 ntBASIC18.78■□□□□ 0.6
COL4A5P29400 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL4A5P29400 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A5P29400 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A5P29400 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL4A5P29400 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL4A5P29400 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL4A5P29400 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A5P29400 PPY2P-201ENST00000582808 702 ntBASIC18.78■□□□□ 0.6
COL4A5P29400 NAT9-222ENST00000583476 583 ntTSL 3 BASIC18.78■□□□□ 0.6
COL4A5P29400 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A5P29400 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
COL4A5P29400 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL4A5P29400 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A5P29400 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 AC106820.2-201ENST00000563775 3264 ntBASIC18.77■□□□□ 0.6
COL4A5P29400 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A5P29400 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
COL4A5P29400 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL4A5P29400 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A5P29400 EIF3FP3-201ENST00000434851 1086 ntBASIC18.77■□□□□ 0.6
COL4A5P29400 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A5P29400 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A5P29400 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 AC134698.3-201ENST00000523880 214 ntBASIC18.77■□□□□ 0.6
COL4A5P29400 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A5P29400 MIR4313-201ENST00000580760 101 ntBASIC18.77■□□□□ 0.6
COL4A5P29400 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A5P29400 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A5P29400 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A5P29400 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL4A5P29400 AC079336.7-201ENST00000623428 1078 ntBASIC18.77■□□□□ 0.6
COL4A5P29400 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A5P29400 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL4A5P29400 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A5P29400 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A5P29400 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
COL4A5P29400 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.77■□□□□ 0.59
COL4A5P29400 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A5P29400 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
COL4A5P29400 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A5P29400 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL4A5P29400 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A5P29400 IGF1-203ENST00000392904 761 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms