Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 NKILA-202ENST00000614771 2598 ntBASIC18.38■□□□□ 0.53
COL2A1P02458 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL2A1P02458 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.38■□□□□ 0.53
COL2A1P02458 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.38■□□□□ 0.53
COL2A1P02458 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.38■□□□□ 0.53
COL2A1P02458 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.38■□□□□ 0.53
COL2A1P02458 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.38■□□□□ 0.53
COL2A1P02458 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 AL645728.2-202ENST00000641679 227 ntBASIC18.38■□□□□ 0.53
COL2A1P02458 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
COL2A1P02458 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL2A1P02458 LINC02447-202ENST00000501888 2146 ntBASIC18.38■□□□□ 0.53
COL2A1P02458 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.38■□□□□ 0.53
COL2A1P02458 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL2A1P02458 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL2A1P02458 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.37■□□□□ 0.53
COL2A1P02458 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC18.37■□□□□ 0.53
COL2A1P02458 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.37■□□□□ 0.53
COL2A1P02458 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18.37■□□□□ 0.53
COL2A1P02458 MIR6869-201ENST00000619434 62 ntBASIC18.37■□□□□ 0.53
COL2A1P02458 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC18.37■□□□□ 0.53
COL2A1P02458 BX539320.1-201ENST00000623759 877 ntBASIC18.37■□□□□ 0.53
COL2A1P02458 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.37■□□□□ 0.53
COL2A1P02458 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 KRT8P35-201ENST00000483942 1338 ntBASIC18.37■□□□□ 0.53
COL2A1P02458 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.37■□□□□ 0.53
COL2A1P02458 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL2A1P02458 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.36■□□□□ 0.53
COL2A1P02458 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.36■□□□□ 0.53
COL2A1P02458 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.36■□□□□ 0.53
COL2A1P02458 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.36■□□□□ 0.53
COL2A1P02458 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL2A1P02458 AC006001.1-201ENST00000325130 474 ntBASIC18.36■□□□□ 0.53
COL2A1P02458 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.36■□□□□ 0.53
COL2A1P02458 AC025181.2-201ENST00000606994 802 ntBASIC18.36■□□□□ 0.53
COL2A1P02458 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.36■□□□□ 0.53
COL2A1P02458 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.36■□□□□ 0.53
COL2A1P02458 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.36■□□□□ 0.53
COL2A1P02458 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL2A1P02458 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL2A1P02458 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.35■□□□□ 0.53
COL2A1P02458 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL2A1P02458 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.35■□□□□ 0.53
COL2A1P02458 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms