Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.746e-6■■■■■ 103.4
SF3B1O75533 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.742e-7■■■■■ 103.4
SF3B1O75533 HDAC6-225ENST00000483506 545 ntTSL 419.63■□□□□ 0.731e-8■■■■■ 103.4
SF3B1O75533 HERC3-205ENST00000426683 559 ntTSL 419.62■□□□□ 0.731e-8■■■■■ 103.4
SF3B1O75533 PKN1-212ENST00000590097 848 ntTSL 319.59■□□□□ 0.736e-6■■■■■ 103.4
SF3B1O75533 PKN1-203ENST00000585619 582 ntTSL 519.59■□□□□ 0.736e-6■■■■■ 103.4
SF3B1O75533 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.735e-6■■■■■ 103.4
SF3B1O75533 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.53■□□□□ 0.721e-8■■■■■ 103.4
SF3B1O75533 THRB-204ENST00000413780 896 ntTSL 319.53■□□□□ 0.729e-9■■■■■ 103.4
SF3B1O75533 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.716e-6■■■■■ 103.4
SF3B1O75533 AMDHD2-210ENST00000565570 1844 ntTSL 519.5■□□□□ 0.716e-6■■■■■ 103.4
SF3B1O75533 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.48■□□□□ 0.711e-6■■■■■ 103.4
SF3B1O75533 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.45■□□□□ 0.76e-6■■■■■ 103.4
SF3B1O75533 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.76e-6■■■■■ 103.4
SF3B1O75533 SPNS1-208ENST00000566059 1615 ntTSL 519.38■□□□□ 0.692e-6■■■■■ 103.4
SF3B1O75533 ANKRD11-214ENST00000568100 878 ntTSL 219.34■□□□□ 0.696e-6■■■■■ 103.4
SF3B1O75533 GORASP1-208ENST00000431601 2346 ntTSL 519.34■□□□□ 0.696e-6■■■■■ 103.4
SF3B1O75533 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.696e-6■■■■■ 103.4
SF3B1O75533 RER1-206ENST00000462129 585 ntTSL 219.32■□□□□ 0.681e-8■■■■■ 103.4
SF3B1O75533 RFXANK-212ENST00000543157 919 ntTSL 219.31■□□□□ 0.681e-8■■■■■ 103.4
SF3B1O75533 PPP4C-210ENST00000567040 879 ntTSL 219.31■□□□□ 0.686e-6■■■■■ 103.4
SF3B1O75533 PPOX-208ENST00000470607 965 ntTSL 319.26■□□□□ 0.672e-12■■■■■ 103.4
SF3B1O75533 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.676e-6■■■■■ 103.4
SF3B1O75533 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.676e-6■■■■■ 103.4
SF3B1O75533 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.676e-6■■■■■ 103.4
SF3B1O75533 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.671e-8■■■■■ 103.4
SF3B1O75533 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.662e-12■■■■■ 103.4
SF3B1O75533 MAN1B1-216ENST00000550113 774 ntTSL 319.18■□□□□ 0.666e-6■■■■■ 103.4
SF3B1O75533 FBXW4-202ENST00000457105 630 ntTSL 519.13■□□□□ 0.658e-20■■■■■ 103.4
SF3B1O75533 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.652e-6■■■■■ 103.4
SF3B1O75533 PLXNA3-203ENST00000478236 460 ntTSL 319.06■□□□□ 0.646e-6■■■■■ 103.4
SF3B1O75533 RADIL-207ENST00000484211 764 ntTSL 419.06■□□□□ 0.646e-6■■■■■ 103.4
SF3B1O75533 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.05■□□□□ 0.645e-6■■■■■ 103.4
SF3B1O75533 KLC2-212ENST00000526758 594 ntTSL 419.05■□□□□ 0.641e-8■■■■■ 103.4
SF3B1O75533 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.646e-6■■■■■ 103.4
SF3B1O75533 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.03■□□□□ 0.642e-6■■■■■ 103.4
SF3B1O75533 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.641e-8■■■■■ 103.4
SF3B1O75533 CD151-215ENST00000529810 608 ntTSL 319.02■□□□□ 0.641e-8■■■■■ 103.4
SF3B1O75533 DDX51-204ENST00000541489 806 ntTSL 1 (best)19.02■□□□□ 0.646e-6■■■■■ 103.4
SF3B1O75533 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.02■□□□□ 0.646e-6■■■■■ 103.4
SF3B1O75533 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.632e-6■■■■■ 103.4
SF3B1O75533 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.99■□□□□ 0.636e-6■■■■■ 103.4
SF3B1O75533 C19orf24-205ENST00000590269 751 ntTSL 318.99■□□□□ 0.631e-8■■■■■ 103.4
SF3B1O75533 TSC2-221ENST00000568366 767 ntTSL 418.98■□□□□ 0.632e-12■■■■■ 103.4
SF3B1O75533 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.98■□□□□ 0.631e-8■■■■■ 103.4
SF3B1O75533 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.92■□□□□ 0.622e-12■■■■■ 103.4
SF3B1O75533 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.92■□□□□ 0.621e-8■■■■■ 103.4
SF3B1O75533 RMND5B-204ENST00000507575 2092 ntTSL 218.91■□□□□ 0.626e-6■■■■■ 103.4
SF3B1O75533 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.88■□□□□ 0.616e-6■■■■■ 103.4
SF3B1O75533 RECQL5-216ENST00000582548 709 ntTSL 518.83■□□□□ 0.611e-8■■■■■ 103.4
SF3B1O75533 COA1-212ENST00000448704 1599 ntTSL 1 (best)18.83■□□□□ 0.61e-8■■■■■ 103.4
SF3B1O75533 KDM5C-207ENST00000429877 870 ntTSL 318.82■□□□□ 0.62e-6■■■■■ 103.4
SF3B1O75533 POLR2E-209ENST00000591767 1214 ntTSL 218.79■□□□□ 0.63e-6■■■■■ 103.4
SF3B1O75533 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.77■□□□□ 0.61e-8■■■■■ 103.4
SF3B1O75533 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.77■□□□□ 0.591e-8■■■■■ 103.4
SF3B1O75533 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.73■□□□□ 0.596e-6■■■■■ 103.4
SF3B1O75533 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.7■□□□□ 0.581e-8■■■■■ 103.4
SF3B1O75533 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.69■□□□□ 0.581e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-202ENST00000414148 360 ntTSL 518.67■□□□□ 0.586e-6■■■■■ 103.4
SF3B1O75533 HERC3-211ENST00000513325 582 ntTSL 518.67■□□□□ 0.581e-8■■■■■ 103.4
SF3B1O75533 TRAPPC3-207ENST00000497251 715 ntTSL 218.65■□□□□ 0.586e-6■■■■■ 103.4
SF3B1O75533 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.571e-8■■■■■ 103.4
SF3B1O75533 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.63■□□□□ 0.576e-6■■■■■ 103.4
SF3B1O75533 SEC14L1-221ENST00000588721 647 ntTSL 218.61■□□□□ 0.572e-12■■■■■ 103.4
SF3B1O75533 THRB-212ENST00000453729 703 ntTSL 1 (best)18.59■□□□□ 0.579e-9■■■■■ 103.4
SF3B1O75533 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.572e-6■■■■■ 103.4
SF3B1O75533 TACC1-212ENST00000521050 491 ntTSL 1 (best)18.58■□□□□ 0.571e-8■■■■■ 103.4
SF3B1O75533 TSC2-214ENST00000488675 567 ntTSL 218.53■□□□□ 0.561e-8■■■■■ 103.4
SF3B1O75533 SEC14L1-226ENST00000591413 918 ntTSL 218.52■□□□□ 0.562e-12■■■■■ 103.4
SF3B1O75533 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.48■□□□□ 0.551e-8■■■■■ 103.4
SF3B1O75533 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.546e-6■■■■■ 103.4
SF3B1O75533 ITPA-204ENST00000460550 967 ntTSL 218.36■□□□□ 0.536e-6■■■■■ 103.4
SF3B1O75533 ASB16-AS1-205ENST00000618557 1328 nt18.34■□□□□ 0.531e-8■■■■■ 103.4
SF3B1O75533 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.33■□□□□ 0.536e-6■■■■■ 103.4
SF3B1O75533 SPNS1-211ENST00000568829 780 ntTSL 518.32■□□□□ 0.522e-6■■■■■ 103.4
SF3B1O75533 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.26■□□□□ 0.512e-6■■■■■ 103.4
SF3B1O75533 FAM126B-205ENST00000453765 536 ntTSL 418.21■□□□□ 0.516e-6■■■■■ 103.4
SF3B1O75533 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.19■□□□□ 0.56e-6■■■■■ 103.4
SF3B1O75533 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.19■□□□□ 0.52e-12■■■■■ 103.4
SF3B1O75533 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.12■□□□□ 0.492e-6■■■■■ 103.4
SF3B1O75533 ETFDH-204ENST00000507475 767 ntTSL 518.12■□□□□ 0.496e-6■■■■■ 103.4
SF3B1O75533 RRP1-206ENST00000492638 1017 ntTSL 218.12■□□□□ 0.496e-6■■■■■ 103.4
SF3B1O75533 NDST1-202ENST00000518299 769 ntTSL 218.09■□□□□ 0.496e-6■■■■■ 103.4
SF3B1O75533 PRR5-207ENST00000432916 1430 ntTSL 218.08■□□□□ 0.486e-6■■■■■ 103.4
SF3B1O75533 RPL13P5-205ENST00000451612 587 ntTSL 418.05■□□□□ 0.481e-8■■■■■ 103.4
SF3B1O75533 NCKIPSD-208ENST00000454134 998 ntTSL 318.05■□□□□ 0.481e-8■■■■■ 103.4
SF3B1O75533 WDR82-203ENST00000469000 587 ntTSL 518.03■□□□□ 0.486e-6■■■■■ 103.4
SF3B1O75533 ITPA-208ENST00000483354 1028 ntTSL 318.02■□□□□ 0.486e-6■■■■■ 103.4
SF3B1O75533 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.02■□□□□ 0.486e-6■■■■■ 103.4
SF3B1O75533 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.476e-6■■■■■ 103.4
SF3B1O75533 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.476e-6■■■■■ 103.4
SF3B1O75533 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.99■□□□□ 0.471e-6■■■■■ 103.4
SF3B1O75533 RNF40-207ENST00000565931 481 ntTSL 417.95■□□□□ 0.461e-8■■■■■ 103.4
SF3B1O75533 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.461e-8■■■■■ 103.4
SF3B1O75533 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.461e-8■■■■■ 103.4
SF3B1O75533 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.451e-8■■■■■ 103.4
SF3B1O75533 EMID1-209ENST00000484039 770 ntTSL 517.85■□□□□ 0.451e-8■■■■■ 103.4
SF3B1O75533 RENBP-210ENST00000475904 580 ntTSL 417.82■□□□□ 0.446e-6■■■■■ 103.4
SF3B1O75533 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.81■□□□□ 0.441e-8■■■■■ 103.4
SF3B1O75533 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.446e-6■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1291.3 ms