Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS4BO75351 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.77■□□□□ 0.12
VPS4BO75351 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS4BO75351 AC245100.5-201ENST00000452108 331 ntBASIC15.77■□□□□ 0.12
VPS4BO75351 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.77■□□□□ 0.12
VPS4BO75351 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.77■□□□□ 0.12
VPS4BO75351 AL031055.1-201ENST00000606362 631 ntBASIC15.77■□□□□ 0.12
VPS4BO75351 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 AL513210.1-201ENST00000629608 234 ntBASIC15.77■□□□□ 0.12
VPS4BO75351 AL645728.2-201ENST00000641974 660 ntBASIC15.77■□□□□ 0.12
VPS4BO75351 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.77■□□□□ 0.12
VPS4BO75351 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VPS4BO75351 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VPS4BO75351 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
VPS4BO75351 PRAL-201ENST00000624952 3286 ntBASIC15.77■□□□□ 0.11
VPS4BO75351 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
VPS4BO75351 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.77■□□□□ 0.11
VPS4BO75351 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.77■□□□□ 0.11
VPS4BO75351 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS4BO75351 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS4BO75351 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.77■□□□□ 0.11
VPS4BO75351 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.77■□□□□ 0.11
VPS4BO75351 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
VPS4BO75351 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 IGLL3P-201ENST00000412472 434 ntBASIC15.76■□□□□ 0.11
VPS4BO75351 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 AC005498.2-205ENST00000593218 784 ntBASIC15.76■□□□□ 0.11
VPS4BO75351 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.76■□□□□ 0.11
VPS4BO75351 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VPS4BO75351 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 AC073347.1-201ENST00000421633 2643 ntBASIC15.76■□□□□ 0.11
VPS4BO75351 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.76■□□□□ 0.11
VPS4BO75351 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
VPS4BO75351 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VPS4BO75351 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
VPS4BO75351 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 AC004461.1-201ENST00000412461 403 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.75■□□□□ 0.11
VPS4BO75351 AC023141.5-201ENST00000458585 616 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 AC067863.1-201ENST00000494933 530 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS4BO75351 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.75■□□□□ 0.11
VPS4BO75351 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 AL365330.1-201ENST00000607459 531 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 ACTL9-202ENST00000612068 1252 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 AJ011932.1-201ENST00000621707 465 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 LINC00628-201ENST00000628516 1289 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 AC105339.1-204ENST00000636249 355 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 AF228730.6-201ENST00000641497 218 ntBASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms